SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0815
         (751 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13920.1 68416.m01758 eukaryotic translation initiation facto...   123   1e-28
At1g72730.1 68414.m08410 eukaryotic translation initiation facto...   122   2e-28
At1g54270.1 68414.m06187 eukaryotic translation initiation facto...   120   1e-27
At3g19760.1 68416.m02501 eukaryotic translation initiation facto...   118   4e-27
At1g51380.1 68414.m05780 eukaryotic translation initiation facto...   106   1e-23
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila...    80   1e-15
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila...    80   1e-15
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)...    77   9e-15
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)...    77   9e-15
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative              72   5e-13
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila...    66   2e-11
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila...    62   3e-10
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative              62   4e-10
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)...    62   4e-10
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)...    60   2e-09
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)...    60   2e-09
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar...    60   2e-09
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c...    60   2e-09
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c...    60   2e-09
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s...    59   3e-09
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar...    59   4e-09
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden...    57   1e-08
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar...    56   3e-08
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he...    56   3e-08
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ...    56   3e-08
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ...    56   3e-08
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ...    56   3e-08
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila...    55   4e-08
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar...    55   4e-08
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)...    54   1e-07
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar...    54   1e-07
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar...    53   2e-07
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar...    53   2e-07
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative           52   5e-07
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY...    52   5e-07
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ...    51   7e-07
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ...    51   7e-07
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co...    51   7e-07
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila...    51   7e-07
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica...    51   9e-07
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica...    51   9e-07
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id...    51   9e-07
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA...    51   9e-07
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ...    50   1e-06
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila...    49   3e-06
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila...    49   4e-06
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)       48   9e-06
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ...    47   1e-05
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim...    46   2e-05
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar...    46   4e-05
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)...    45   6e-05
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar...    45   6e-05
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ...    44   8e-05
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila...    44   8e-05
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai...    44   8e-05
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he...    43   3e-04
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /...    42   3e-04
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative              42   4e-04
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai...    42   6e-04
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)...    42   6e-04
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila...    37   0.012
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)...    37   0.012
At2g28600.1 68415.m03476 expressed protein                             35   0.050
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai...    35   0.066
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)...    31   0.82 
At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containi...    30   1.4  
At3g10020.1 68416.m01202 expressed protein                             29   2.5  
At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger) fa...    29   3.3  
At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly ...    29   3.3  
At1g15140.3 68414.m01810 oxidoreductase NAD-binding domain-conta...    29   4.4  
At1g15140.2 68414.m01809 oxidoreductase NAD-binding domain-conta...    29   4.4  
At1g15140.1 68414.m01808 oxidoreductase NAD-binding domain-conta...    29   4.4  
At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containi...    28   7.6  
At1g76010.1 68414.m08825 expressed protein                             28   7.6  

>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
           4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
           contains Pfam profile PF00270: DEAD/DEAH box helicase;
           contains Pfam profile PF00271: Helicase conserved
           C-terminal domain
          Length = 412

 Score =  123 bits (297), Expect = 1e-28
 Identities = 58/84 (69%), Positives = 71/84 (84%)
 Frame = +2

Query: 257 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 436
           +G DVI QAQSGTGKTATF   +LQQ+D S+ +CQAL+LAPTRELAQQI+KV+ ALGD+L
Sbjct: 75  KGLDVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYL 134

Query: 437 NAKCHACIGGTNVREDIRQLESGV 508
             K HAC+GGT+VRED R L++GV
Sbjct: 135 GVKVHACVGGTSVREDQRILQAGV 158



 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 39/64 (60%), Positives = 52/64 (81%)
 Frame = +1

Query: 508 YVXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQVILL 687
           +V VGTPGRV+DM+ R++L A+ IK+FVLDEADEMLSRGF DQ +D+ ++L   +QV + 
Sbjct: 159 HVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVF 218

Query: 688 SATM 699
           SATM
Sbjct: 219 SATM 222



 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 31/44 (70%), Positives = 35/44 (79%)
 Frame = +3

Query: 129 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCSK 260
           T +D V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P  K
Sbjct: 32  TSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCK 75


>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
           4A, putative / eIF-4A, putative similar to Eukaryotic
           initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
           identical to (putative) RNA helicase GB:CAA09211
           [Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
           628-636 (1999))
          Length = 414

 Score =  122 bits (295), Expect = 2e-28
 Identities = 58/84 (69%), Positives = 70/84 (83%)
 Frame = +2

Query: 257 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 436
           +G DVI QAQSGTGKTATF   +LQQ+D S+ +CQAL+LAPTRELAQQI+KV+ ALGD+L
Sbjct: 77  KGLDVIQQAQSGTGKTATFCSGVLQQLDISLVQCQALVLAPTRELAQQIEKVMRALGDYL 136

Query: 437 NAKCHACIGGTNVREDIRQLESGV 508
             K  AC+GGT+VRED R L+SGV
Sbjct: 137 GVKAQACVGGTSVREDQRVLQSGV 160



 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 39/64 (60%), Positives = 53/64 (82%)
 Frame = +1

Query: 508 YVXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQVILL 687
           +V VGTPGRV+D++ R++L A+ IK+FVLDEADEMLSRGF DQ +D+ ++L + VQV + 
Sbjct: 161 HVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVF 220

Query: 688 SATM 699
           SATM
Sbjct: 221 SATM 224



 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 30/47 (63%), Positives = 38/47 (80%)
 Frame = +3

Query: 120 TLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCSK 260
           T  T++D+V ++FD M L+ +LLRGIYAYGFEKPSAIQQR I+P  K
Sbjct: 31  TFYTNYDEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCK 77


>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
           4A-2 / eIF-4A-2 similar to eukaryotic translation
           initiation factor 4A GI:19696 from [Nicotiana
           plumbaginifolia]
          Length = 412

 Score =  120 bits (289), Expect = 1e-27
 Identities = 56/84 (66%), Positives = 70/84 (83%)
 Frame = +2

Query: 257 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 436
           +G DVI QAQSGTGKTATF   +LQQ+D ++ +CQAL+LAPTRELAQQI+KV+ ALGD+ 
Sbjct: 75  KGLDVIQQAQSGTGKTATFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDYQ 134

Query: 437 NAKCHACIGGTNVREDIRQLESGV 508
             K HAC+GGT+VRED R L++GV
Sbjct: 135 GVKVHACVGGTSVREDQRILQAGV 158



 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 38/64 (59%), Positives = 51/64 (79%)
 Frame = +1

Query: 508 YVXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQVILL 687
           +V VGTPGRV+DM+ R++L  + IK+FVLDEADEMLSRGF DQ +D+ ++L   +QV + 
Sbjct: 159 HVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVF 218

Query: 688 SATM 699
           SATM
Sbjct: 219 SATM 222



 Score = 67.7 bits (158), Expect = 8e-12
 Identities = 31/44 (70%), Positives = 36/44 (81%)
 Frame = +3

Query: 129 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCSK 260
           T +D+V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P  K
Sbjct: 32  TSYDEVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCK 75


>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
           4A, putative / eIF-4A, putative / DEAD box RNA helicase,
           putative contains DEAD/DEAH helicase domain; similar to
           RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
           identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
          Length = 408

 Score =  118 bits (284), Expect = 4e-27
 Identities = 56/86 (65%), Positives = 69/86 (80%)
 Frame = +2

Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
           +LQGRDVIAQAQSGTGKT+  ++S+ Q +DTS RE QALIL+PTRELA Q +K + A+G 
Sbjct: 69  ILQGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIGL 128

Query: 431 HLNAKCHACIGGTNVREDIRQLESGV 508
           H N + HACIGG +V EDIR+LE GV
Sbjct: 129 HANIQAHACIGGNSVGEDIRKLEHGV 154



 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 39/64 (60%), Positives = 48/64 (75%)
 Frame = +1

Query: 508 YVXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQVILL 687
           +V  GTPGRV DMI RR+L    IKL +LDE+DEMLSRGF DQ +DV + L  D+QV L+
Sbjct: 155 HVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLV 214

Query: 688 SATM 699
           SAT+
Sbjct: 215 SATL 218



 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 26/41 (63%), Positives = 35/41 (85%)
 Frame = +3

Query: 129 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMP 251
           TD  + + +F+DM +KE++LRG+Y YGFEKPSAIQQRA+MP
Sbjct: 28  TDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMP 68


>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
           4A, putative / eIF-4A, putative
          Length = 392

 Score =  106 bits (255), Expect = 1e-23
 Identities = 48/86 (55%), Positives = 67/86 (77%)
 Frame = +2

Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
           +L+GRDVIAQAQSGTGKT+  +IS+ Q ++ S R+ Q L+L+P+RELA Q +K + A+G 
Sbjct: 56  ILKGRDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGA 115

Query: 431 HLNAKCHACIGGTNVREDIRQLESGV 508
           H N + HACIGG ++ EDI++LE GV
Sbjct: 116 HTNIQAHACIGGKSIGEDIKKLERGV 141



 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 36/60 (60%), Positives = 45/60 (75%)
 Frame = +1

Query: 520 GTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQVILLSATM 699
           GTPGRVYDMI R +L    +KL VLDE+DEMLS+G  DQ +DV + L  D+QV L+SAT+
Sbjct: 146 GTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVCLISATL 205



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 20/38 (52%), Positives = 32/38 (84%)
 Frame = +3

Query: 147 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCSK 260
           +++FDDM + +++LRG+Y YG++KPS IQQRA++P  K
Sbjct: 21  IKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILK 58


>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
           to ATP-dependent RNA helicases
          Length = 505

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 38/81 (46%), Positives = 55/81 (67%)
 Frame = +2

Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
           L GRD++A+A++GTGKTA F I +L++ID      QA+I+ PTRELA Q  +V   LG H
Sbjct: 166 LTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKH 225

Query: 434 LNAKCHACIGGTNVREDIRQL 496
           L  +     GGT++++DI +L
Sbjct: 226 LKIQVMVTTGGTSLKDDIMRL 246



 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 20/63 (31%), Positives = 34/63 (53%)
 Frame = +1

Query: 508 YVXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQVILL 687
           ++ VGTPGR+ D+  +         + V+DEAD++LS+ F      +   L    Q+++ 
Sbjct: 251 HLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMF 310

Query: 688 SAT 696
           SAT
Sbjct: 311 SAT 313



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 18/30 (60%), Positives = 22/30 (73%)
 Frame = +3

Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
           F+D  LK ELL GIY  GFE+PS IQ+ +I
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESI 162


>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
           to ATP-dependent RNA helicases
          Length = 505

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 38/81 (46%), Positives = 55/81 (67%)
 Frame = +2

Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
           L GRD++A+A++GTGKTA F I +L++ID      QA+I+ PTRELA Q  +V   LG H
Sbjct: 166 LTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKH 225

Query: 434 LNAKCHACIGGTNVREDIRQL 496
           L  +     GGT++++DI +L
Sbjct: 226 LKIQVMVTTGGTSLKDDIMRL 246



 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 20/63 (31%), Positives = 34/63 (53%)
 Frame = +1

Query: 508 YVXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQVILL 687
           ++ VGTPGR+ D+  +         + V+DEAD++LS+ F      +   L    Q+++ 
Sbjct: 251 HLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMF 310

Query: 688 SAT 696
           SAT
Sbjct: 311 SAT 313



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 18/30 (60%), Positives = 22/30 (73%)
 Frame = +3

Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
           F+D  LK ELL GIY  GFE+PS IQ+ +I
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESI 162


>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
           identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
          Length = 498

 Score = 77.4 bits (182), Expect = 9e-15
 Identities = 38/85 (44%), Positives = 55/85 (64%)
 Frame = +2

Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
           L G D++A+A++GTGKT  F I +L++ID +    QA+IL PTRELA Q  +V   L  +
Sbjct: 159 LTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKY 218

Query: 434 LNAKCHACIGGTNVREDIRQLESGV 508
           LN +     GGT++R+DI +L   V
Sbjct: 219 LNIQVMVTTGGTSLRDDIMRLHQPV 243



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 20/63 (31%), Positives = 35/63 (55%)
 Frame = +1

Query: 508 YVXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQVILL 687
           ++ VGTPGR+ D+  +         + V+DEAD++LS  F     ++ + L  + Q ++ 
Sbjct: 244 HLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMF 303

Query: 688 SAT 696
           SAT
Sbjct: 304 SAT 306



 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 18/30 (60%), Positives = 23/30 (76%)
 Frame = +3

Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
           F+D  LK +LL+GIY  GFEKPS IQ+ +I
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESI 155


>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
           identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
          Length = 498

 Score = 77.4 bits (182), Expect = 9e-15
 Identities = 38/85 (44%), Positives = 55/85 (64%)
 Frame = +2

Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
           L G D++A+A++GTGKT  F I +L++ID +    QA+IL PTRELA Q  +V   L  +
Sbjct: 159 LTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKY 218

Query: 434 LNAKCHACIGGTNVREDIRQLESGV 508
           LN +     GGT++R+DI +L   V
Sbjct: 219 LNIQVMVTTGGTSLRDDIMRLHQPV 243



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 20/63 (31%), Positives = 35/63 (55%)
 Frame = +1

Query: 508 YVXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQVILL 687
           ++ VGTPGR+ D+  +         + V+DEAD++LS  F     ++ + L  + Q ++ 
Sbjct: 244 HLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMF 303

Query: 688 SAT 696
           SAT
Sbjct: 304 SAT 306



 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 18/30 (60%), Positives = 23/30 (76%)
 Frame = +3

Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
           F+D  LK +LL+GIY  GFEKPS IQ+ +I
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESI 155


>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
          Length = 528

 Score = 71.7 bits (168), Expect = 5e-13
 Identities = 36/81 (44%), Positives = 51/81 (62%)
 Frame = +2

Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
           L G D++A+A++GTGKT  F I  L++ID      QA+IL PTRELA Q  +V   L  +
Sbjct: 189 LTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKY 248

Query: 434 LNAKCHACIGGTNVREDIRQL 496
           L  +     GGT++R+DI +L
Sbjct: 249 LKIEVMVTTGGTSLRDDIMRL 269



 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 20/63 (31%), Positives = 35/63 (55%)
 Frame = +1

Query: 508 YVXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQVILL 687
           ++ VGTPGR+ D+  +         + V+DEAD++LS  F     ++ + L    Q+++ 
Sbjct: 274 HLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPESRQILMF 333

Query: 688 SAT 696
           SAT
Sbjct: 334 SAT 336



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 19/30 (63%), Positives = 23/30 (76%)
 Frame = +3

Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
           F+D  LK +LLRGIY  GFEKPS IQ+ +I
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESI 185


>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
           to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
           melanogaster and is a member of PF|00270 DEAD/DEAH box
           helicase family
          Length = 491

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 34/84 (40%), Positives = 50/84 (59%)
 Frame = +2

Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
           +L GRDV+  AQ+G+GKTA F++ IL ++        AL++ PTRELA Q+ +   ALG 
Sbjct: 92  ILAGRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVVTPTRELAFQLAEQFKALGS 151

Query: 431 HLNAKCHACIGGTNVREDIRQLES 502
            LN +C   +GG ++      L S
Sbjct: 152 CLNLRCSVIVGGMDMLTQTMSLVS 175



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
 Frame = +1

Query: 508 YVXVGTPGRVYDMITRRA----LHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQ 675
           ++ + TPGR+  ++        + + T K  VLDEAD +L  GF D+   + + L    Q
Sbjct: 178 HIVITTPGRIKVLLENNPDVPPVFSRT-KFLVLDEADRVLDVGFQDELRTIFQCLPKSRQ 236

Query: 676 VILLSATM 699
            +L SATM
Sbjct: 237 TLLFSATM 244


>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
           to RNA helicase GI:3776027 from [Arabidopsis thaliana]
          Length = 513

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 31/87 (35%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
 Frame = +2

Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE--CQALILAPTRELAQQIQKVVIAL 424
           +L G DV+A A++G+GKTA F I +L+++   + +   +ALIL+PTR+LA+Q  K    L
Sbjct: 62  ILSGVDVVAMARTGSGKTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQTLKFTKEL 121

Query: 425 GDHLNAKCHACIGGTNVREDIRQLESG 505
           G   + +    +GG ++ +   +L  G
Sbjct: 122 GKFTDLRVSLLVGGDSMEDQFEELTKG 148



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
 Frame = +1

Query: 511 VXVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQVILL 687
           V + TPGR+  +++    +   T++  V DEAD +   GF +Q H +   LS + Q +L 
Sbjct: 151 VIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQTLLF 210

Query: 688 SATM 699
           SAT+
Sbjct: 211 SATL 214


>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
          Length = 427

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
 Frame = +2

Query: 260 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL- 436
           G DVI QA+SG GKTA F +S LQQI+ S  +  AL+L  TRELA QI    +    +L 
Sbjct: 83  GMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLP 142

Query: 437 NAKCHACIGGTNVR 478
           + K     GG N++
Sbjct: 143 DTKVSVFYGGVNIK 156



 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
 Frame = +1

Query: 508 YVXVGTPGRVYDMITRRALHANTIKLFVLDEADEML-SRGFXDQXHDVXKMLSADVQVIL 684
           ++ VGTPGRV  +   + L    ++ F+LDE D+ML S        ++ KM   D QV++
Sbjct: 168 HIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227

Query: 685 LSATM 699
            SAT+
Sbjct: 228 FSATL 232



 Score = 32.3 bits (70), Expect = 0.35
 Identities = 16/30 (53%), Positives = 17/30 (56%)
 Frame = +3

Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
           F D  LK ELLR I   GFE PS +Q   I
Sbjct: 48  FRDFLLKPELLRAIVDSGFEHPSEVQHECI 77


>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
           DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
           EMBL:ATH010466
          Length = 427

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
 Frame = +2

Query: 260 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL- 436
           G DVI QA+SG GKTA F +S LQQI+ S  +  AL+L  TRELA QI    +    +L 
Sbjct: 83  GMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLP 142

Query: 437 NAKCHACIGGTNVR 478
           + K     GG N++
Sbjct: 143 DTKVSVFYGGVNIK 156



 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
 Frame = +1

Query: 508 YVXVGTPGRVYDMITRRALHANTIKLFVLDEADEML-SRGFXDQXHDVXKMLSADVQVIL 684
           ++ VGTPGRV  +   + L    ++ F+LDE D+ML S        ++ KM   D QV++
Sbjct: 168 HIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227

Query: 685 LSATM 699
            SAT+
Sbjct: 228 FSATL 232



 Score = 32.3 bits (70), Expect = 0.35
 Identities = 16/30 (53%), Positives = 17/30 (56%)
 Frame = +3

Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
           F D  LK ELLR I   GFE PS +Q   I
Sbjct: 48  FRDFLLKPELLRAIVDSGFEHPSEVQHECI 77


>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
           DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
           EMBL:ATH010466
          Length = 344

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
 Frame = +2

Query: 266 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NA 442
           DVI QA+SG GKTA F +S LQQI+ S  +  AL+L  TRELA QI    +    +L + 
Sbjct: 2   DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDT 61

Query: 443 KCHACIGGTNVR 478
           K     GG N++
Sbjct: 62  KVSVFYGGVNIK 73



 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
 Frame = +1

Query: 508 YVXVGTPGRVYDMITRRALHANTIKLFVLDEADEML-SRGFXDQXHDVXKMLSADVQVIL 684
           ++ VGTPGRV  +   + L    ++ F+LDE D+ML S        ++ KM   D QV++
Sbjct: 85  HIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 144

Query: 685 LSATM 699
            SAT+
Sbjct: 145 FSATL 149


>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
           identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
          Length = 789

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
 Frame = +2

Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIAL 424
           L GRD+ A A +G+GKTA F++  L+++      +   + LIL PTRELA QI  ++  L
Sbjct: 202 LTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNL 261

Query: 425 GDHLNAKCHACIGGTNVRE 481
               + KC   +GG +VRE
Sbjct: 262 AQFTDIKCGLIVGGLSVRE 280



 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
 Frame = +1

Query: 511 VXVGTPGRVYDMITRR-ALHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQVILL 687
           + V TPGR+ D +    ++  + + + +LDEAD +L  GF  +  ++ ++     Q +L 
Sbjct: 291 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTMLF 350

Query: 688 SATM 699
           SATM
Sbjct: 351 SATM 354



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 150 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
           +TF ++NL   LLR     G++KP+ IQ   I
Sbjct: 167 DTFMELNLSRPLLRACETLGYKKPTPIQAACI 198


>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
           RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
           thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 616

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 6/91 (6%)
 Frame = +2

Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILAPTRELAQQIQKVV 415
           ++GRD+I +A++GTGKT  F I I+ +I          R    L+LAPTRELA+Q++K  
Sbjct: 139 MEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEKEF 198

Query: 416 IALGDHLNAKCHACIGGTNVREDIRQLESGV 508
                 L+  C    GGT + + +RQL+ GV
Sbjct: 199 RESAPSLDTIC--LYGGTPIGQQMRQLDYGV 227



 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 28/63 (44%), Positives = 40/63 (63%)
 Frame = +1

Query: 511 VXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQVILLS 690
           V VGTPGRV D++ R AL+ + ++  VLDEAD+ML  GF +    + + L    Q ++ S
Sbjct: 229 VAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFS 288

Query: 691 ATM 699
           ATM
Sbjct: 289 ATM 291


>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
           contains Pfam profile: PF00270 DEAD/DEAH box helicase
          Length = 505

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 29/61 (47%), Positives = 40/61 (65%)
 Frame = +1

Query: 517 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQVILLSAT 696
           +GTPGRV D++++  +  + I  FVLDE D ML RGF DQ   + + LS   QV+L SAT
Sbjct: 241 IGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQALS-QPQVLLFSAT 299

Query: 697 M 699
           +
Sbjct: 300 I 300



 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
 Frame = +2

Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQIDT--------SIRECQALILAPTRELAQQI 403
           A L G+ ++A A +G+GKTA+F + I+ +  T          R   A++LAPTREL  Q+
Sbjct: 143 AALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQV 202

Query: 404 QKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 508
           +     LG  L  K    +GG  +   + +++ GV
Sbjct: 203 EDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGV 237


>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
           contains Pfam profile: PF00270 DEAD/DEAH box helicase
          Length = 368

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 29/61 (47%), Positives = 40/61 (65%)
 Frame = +1

Query: 517 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQVILLSAT 696
           +GTPGRV D++++  +  + I  FVLDE D ML RGF DQ   + + LS   QV+L SAT
Sbjct: 104 IGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQALS-QPQVLLFSAT 162

Query: 697 M 699
           +
Sbjct: 163 I 163



 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
 Frame = +2

Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQIDT--------SIRECQALILAPTRELAQQI 403
           A L G+ ++A A +G+GKTA+F + I+ +  T          R   A++LAPTREL  Q+
Sbjct: 6   AALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQV 65

Query: 404 QKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 508
           +     LG  L  K    +GG  +   + +++ GV
Sbjct: 66  EDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGV 100


>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
           similar to RNA helicases GI:3775995, GI:3775987
           [Arabidopsis thaliana]; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 610

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 6/91 (6%)
 Frame = +2

Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILAPTRELAQQIQKVV 415
           ++GRD+I +A++GTGKT  F I I+ +I          +  Q L+LAPTRELA+Q++K  
Sbjct: 151 MEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEKEF 210

Query: 416 IALGDHLNAKCHACIGGTNVREDIRQLESGV 508
                 L+  C    GGT + + +R+L  G+
Sbjct: 211 RESAPSLDTIC--LYGGTPIGQQMRELNYGI 239



 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 28/63 (44%), Positives = 41/63 (65%)
 Frame = +1

Query: 511 VXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQVILLS 690
           V VGTPGR+ D++ R AL+ + ++  VLDEAD+ML  GF +    + + L A  Q ++ S
Sbjct: 241 VAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMFS 300

Query: 691 ATM 699
           ATM
Sbjct: 301 ATM 303


>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
           SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
           {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
           sapiens] GI:3523150; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 633

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 37/96 (38%), Positives = 52/96 (54%), Gaps = 10/96 (10%)
 Frame = +2

Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQ 400
           LL+GRD++A AQ+G+GKTA F   I+  I  D  ++  +        A+IL+PTRELA Q
Sbjct: 193 LLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQ 252

Query: 401 IQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 508
           I             K     GGT + + +R+LE GV
Sbjct: 253 IHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGV 288



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
 Frame = +1

Query: 511 VXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADV----QV 678
           + V TPGR+ D++ R  +    I+   LDEAD ML  GF  Q   + + +        Q 
Sbjct: 290 ILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQT 349

Query: 679 ILLSAT 696
           +L SAT
Sbjct: 350 LLFSAT 355


>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
           identical to RNA helicase [Arabidopsis thaliana]
           GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain, PF00098: Zinc knuckle
          Length = 747

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 28/63 (44%), Positives = 39/63 (61%)
 Frame = +1

Query: 511 VXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQVILLS 690
           V VGTPGR+ D+I  R+L    ++  VLDEAD+ML+ GF +    + + L    Q +L S
Sbjct: 231 VVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFS 290

Query: 691 ATM 699
           ATM
Sbjct: 291 ATM 293



 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 10/75 (13%)
 Frame = +2

Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQID------TSIREC----QALILAPTRELAQQI 403
           LQGRD+IA+A++GTGKT  F I I++++       T+ R      + L+LAPTRELA+Q+
Sbjct: 137 LQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQV 196

Query: 404 QKVVIALGDHLNAKC 448
           +K +     +L+  C
Sbjct: 197 EKEIKESAPYLSTVC 211


>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
           SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
           {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
           sapiens] GI:3523150; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 646

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 42/105 (40%), Positives = 52/105 (49%), Gaps = 12/105 (11%)
 Frame = +2

Query: 230 PATRNNA--LLQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALIL 373
           P  RN    L  GRD++A AQ+G+GKTA F   I+  I  D  I   +        A+IL
Sbjct: 171 PVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVIL 230

Query: 374 APTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 508
           +PTRELA QI             K     GGT V + IR+LE GV
Sbjct: 231 SPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGV 275



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
 Frame = +1

Query: 511 VXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADV----QV 678
           + V TPGR+ D++ R  +    ++   LDEAD ML  GF  Q   + + +        Q 
Sbjct: 277 ILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQT 336

Query: 679 ILLSAT 696
           +L SAT
Sbjct: 337 MLFSAT 342


>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
           helicase, Mus musculus, PIR:I49731
          Length = 496

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 25/55 (45%), Positives = 39/55 (70%)
 Frame = +2

Query: 263 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 427
           + +IAQA +G+GKT  F + +L ++D ++RE QAL + PTRELA Q  +V+  +G
Sbjct: 132 KHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQALCICPTRELANQNMEVLQKMG 186



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
 Frame = +1

Query: 508 YVXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR-GFXDQXHDVXK---MLSADVQ 675
           +V +GTPG +   +  + L  N +K+ V DEAD ML+  GF D    + K    ++ + Q
Sbjct: 216 HVVIGTPGTLKKWMAFKRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKDIGRVNPNFQ 275

Query: 676 VILLSAT 696
           V+L SAT
Sbjct: 276 VLLFSAT 282



 Score = 33.9 bits (74), Expect = 0.12
 Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = +3

Query: 156 FDDMNLKEELLRGIYA-YGFEKPSAIQ 233
           F+D+NL  EL++G+Y    FEKPS IQ
Sbjct: 93  FEDLNLSPELMKGLYVEMKFEKPSKIQ 119


>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
           RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
           thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 619

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
 Frame = +2

Query: 254 LQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIA 421
           +QGRD++A A++G+GKT  + I     LQ+I    R     L+L+PTRELA QIQ+  + 
Sbjct: 193 MQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVK 252

Query: 422 LGDHLNAKCHACIGGTNVREDIRQLESG 505
            G      C    GG      +R LE G
Sbjct: 253 FGRSSRISCTCLYGGAPKGPQLRDLERG 280



 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 23/62 (37%), Positives = 33/62 (53%)
 Frame = +1

Query: 511 VXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQVILLS 690
           + V TPGR+ D++  R +    I   VLDEAD ML  GF  Q   + K +    Q ++ +
Sbjct: 283 IVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYT 342

Query: 691 AT 696
           AT
Sbjct: 343 AT 344


>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
           RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
           thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 619

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
 Frame = +2

Query: 254 LQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIA 421
           +QGRD++A A++G+GKT  + I     LQ+I    R     L+L+PTRELA QIQ+  + 
Sbjct: 193 MQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVK 252

Query: 422 LGDHLNAKCHACIGGTNVREDIRQLESG 505
            G      C    GG      +R LE G
Sbjct: 253 FGRSSRISCTCLYGGAPKGPQLRDLERG 280



 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 23/62 (37%), Positives = 33/62 (53%)
 Frame = +1

Query: 511 VXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQVILLS 690
           + V TPGR+ D++  R +    I   VLDEAD ML  GF  Q   + K +    Q ++ +
Sbjct: 283 IVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYT 342

Query: 691 AT 696
           AT
Sbjct: 343 AT 344


>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
           RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
           thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 618

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
 Frame = +2

Query: 254 LQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIA 421
           +QGRD++A A++G+GKT  + I     LQ+I    R     L+L+PTRELA QIQ+  + 
Sbjct: 193 MQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVK 252

Query: 422 LGDHLNAKCHACIGGTNVREDIRQLESG 505
            G      C    GG      +R LE G
Sbjct: 253 FGRSSRISCTCLYGGAPKGPQLRDLERG 280



 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 23/62 (37%), Positives = 33/62 (53%)
 Frame = +1

Query: 511 VXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQVILLS 690
           + V TPGR+ D++  R +    I   VLDEAD ML  GF  Q   + K +    Q ++ +
Sbjct: 283 IVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYT 342

Query: 691 AT 696
           AT
Sbjct: 343 AT 344


>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
           to RNA helicase [Rattus norvegicus] GI:897915; contains
           Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
           Helicase conserved C-terminal domain
          Length = 760

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 27/65 (41%), Positives = 34/65 (52%)
 Frame = +1

Query: 505 CYVXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQVIL 684
           C + V TPGR+ DM+  +AL        VLDEAD M   GF  Q   +   +  D Q +L
Sbjct: 352 CEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLL 411

Query: 685 LSATM 699
            SATM
Sbjct: 412 FSATM 416



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
 Frame = +2

Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ---ALILAPTRELAQQIQKVV 415
           +L GRDVI  A++G+GKTA F + ++  I     ++  +    +I APTRELA QI    
Sbjct: 262 VLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEA 321

Query: 416 IALGDHLNAKCHACIGGTNVREDIRQLESG 505
                    +  A  GG +  E  ++L++G
Sbjct: 322 KKFSKAYGLRVSAVYGGMSKHEQFKELKAG 351



 Score = 31.1 bits (67), Expect = 0.82
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 132 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
           D  + V+TF+D     +++  I    +EKP+AIQ +A+
Sbjct: 222 DVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQAL 259


>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
           SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00270: DEAD/DEAH box helicase, PF00271: Helicase
           conserved C-terminal domain
          Length = 733

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 8/92 (8%)
 Frame = +2

Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQID-----TSIRECQ---ALILAPTRELAQQIQK 409
           LQ RDVI  A++G+GKTA F + +L  I      +   E +   A+++APTRELAQQI++
Sbjct: 348 LQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEE 407

Query: 410 VVIALGDHLNAKCHACIGGTNVREDIRQLESG 505
             +    +L  +  + +GG ++ E   ++  G
Sbjct: 408 ETVKFAHYLGFRVTSIVGGQSIEEQGLKITQG 439



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 19/44 (43%), Positives = 24/44 (54%)
 Frame = +1

Query: 505 CYVXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFXDQ 636
           C + + TPGR+ D + RR    N     VLDEAD M+  GF  Q
Sbjct: 440 CEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQ 483



 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 147 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
           + ++++  L  ELL+ +   G++KPS IQ  AI
Sbjct: 312 MRSWEESKLTSELLKAVERAGYKKPSPIQMAAI 344


>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
           probable replication protein A1, Oryza sativa,
           EMBL:AF009179
          Length = 456

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 12/83 (14%)
 Frame = +2

Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------------ALILAPTRELAQ 397
           L+G+DVI  AQ+G+GKT  F+I ILQ +   + + +            A +L+PTRELA 
Sbjct: 44  LEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAI 103

Query: 398 QIQKVVIALGDHLNAKCHACIGG 466
           QI +   ALG  ++ +C   +GG
Sbjct: 104 QIAEQFEALGADISLRCAVLVGG 126



 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
 Frame = +1

Query: 496 GEWCYVXVGTPGRVYD-MITRRALHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADV 672
           G+  +V V TPGR++D M   +     ++K  VLDEAD +L+  F    + + + +  + 
Sbjct: 137 GKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLER 196

Query: 673 QVILLSATM 699
           +  L SATM
Sbjct: 197 KTFLFSATM 205



 Score = 33.1 bits (72), Expect = 0.20
 Identities = 13/36 (36%), Positives = 25/36 (69%)
 Frame = +3

Query: 138 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
           ++VV+TF ++ ++EEL++     G++ PS IQ  A+
Sbjct: 5   NEVVKTFAELGVREELVKACERLGWKNPSKIQAEAL 40


>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
           RNA helicase [Rattus norvegicus] GI:897915; contains
           Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
           Helicase conserved C-terminal domain
          Length = 1166

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
 Frame = +2

Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQ----ALILAPTRELAQQIQKVV 415
           ++ GRD I  A++G+GKT  F + +L+ I D    E       L++APTREL QQI   +
Sbjct: 563 IMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDI 622

Query: 416 IALGDHLNAKCHACIGGTNVREDIRQLESG 505
                 L  +C    GG+ V + I +L+ G
Sbjct: 623 RKFSKPLGIRCVPVYGGSGVAQQISELKRG 652



 Score = 38.7 bits (86), Expect = 0.004
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = +1

Query: 511 VXVGTPGRVYDMI---TRRALHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQVI 681
           + V TPGR+ D++   + +  +   +   V+DEAD M   GF  Q   + + +  + Q +
Sbjct: 655 IVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTV 714

Query: 682 LLSAT 696
           L SAT
Sbjct: 715 LFSAT 719


>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
           RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain, PF00397:
           WW domain
          Length = 713

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
 Frame = +2

Query: 254 LQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIA 421
           +Q RD++A A++G+GKT  + I     LQ+I    R     L+L+PTRELA QIQ   + 
Sbjct: 264 MQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVLSPTRELATQIQVEALK 323

Query: 422 LGDHLNAKCHACIGGTNVREDIRQLESGV 508
            G      C    GG      ++++E GV
Sbjct: 324 FGKSSKISCACLYGGAPKGPQLKEIERGV 352



 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 20/62 (32%), Positives = 33/62 (53%)
 Frame = +1

Query: 511 VXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQVILLS 690
           + V TPGR+ D++  + +  + +   VLDEAD ML  GF  Q   +   +    Q ++ +
Sbjct: 354 IVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYT 413

Query: 691 AT 696
           AT
Sbjct: 414 AT 415


>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
           RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain, PF00397:
           WW domain
          Length = 1088

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
 Frame = +2

Query: 254 LQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIA 421
           LQ RD++A A++G+GKT  + I    +L+      R     LILAPTRELA QIQ   + 
Sbjct: 470 LQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVLILAPTRELATQIQDEALR 529

Query: 422 LGDHLNAKCHACIGGTNVREDIRQLESG 505
            G      C    GG      +++LE G
Sbjct: 530 FGRSSRISCTCLYGGAPKGPQLKELERG 557



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 21/62 (33%), Positives = 33/62 (53%)
 Frame = +1

Query: 511 VXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQVILLS 690
           + V TPGR+ D++  + +    + L VLDEAD ML  GF  Q   +   +    Q ++ +
Sbjct: 560 IVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYT 619

Query: 691 AT 696
           AT
Sbjct: 620 AT 621


>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 
          Length = 591

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 22/64 (34%), Positives = 36/64 (56%)
 Frame = +1

Query: 508 YVXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQVILL 687
           ++ V TPGR+ DM+ ++ +  +  +   LDEAD ++  GF D   +V     +  Q +L 
Sbjct: 280 HIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTLLF 339

Query: 688 SATM 699
           SATM
Sbjct: 340 SATM 343



 Score = 38.3 bits (85), Expect = 0.005
 Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 14/100 (14%)
 Frame = +2

Query: 251 LLQGRDVIAQAQSGTGKTATF-----SISILQQIDTSIRECQ---ALILAPTRELAQQIQ 406
           +L GRD+I  A +G+GKT  F      I++ +++   I   +    LI+ P+RELA+Q  
Sbjct: 180 ILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTY 239

Query: 407 KVV------IALGDHLNAKCHACIGGTNVREDIRQLESGV 508
           +VV      +    +   +   CIGG ++R  +  ++ GV
Sbjct: 240 EVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGV 279


>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
           EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
           sapiens, SWISSPROT:IF42_HUMAN
          Length = 472

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 25/54 (46%), Positives = 33/54 (61%)
 Frame = +2

Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKV 412
           L  GRD I  AQ+G+GKT T+ + I   I+      QA+I+ PTREL  Q+ KV
Sbjct: 110 LFTGRDCILHAQTGSGKTLTYLLLIFSLINPQRSSVQAVIVVPTRELGMQVTKV 163


>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
           similar to RNA helicase DBY protein [Mus musculus]
           GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
           protein 2) {Homo sapiens}; contains Pfam profiles
           PF00270: DEAD/DEAH box helicase, PF00271: Helicase
           conserved C-terminal domain; identical to cDNA DEAD box
           RNA helicase, RH11 GI:3775998
          Length = 612

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
 Frame = +2

Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQ 400
           LL  RD++A AQ+G+GKTA F   I+  I  D  +   +        A+IL+PTRELA Q
Sbjct: 185 LLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQ 244

Query: 401 IQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 505
           I             K     GGT + + +R+LE G
Sbjct: 245 IHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERG 279



 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
 Frame = +1

Query: 505 CYVXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADV---- 672
           C + V TPGR+ D++ R  +    I+   LDEAD ML  GF  Q   + + +        
Sbjct: 280 CDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVR 339

Query: 673 QVILLSAT 696
           Q +L SAT
Sbjct: 340 QTMLFSAT 347


>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
           similar to RNA helicase DBY protein [Mus musculus]
           GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
           protein 2) {Homo sapiens}; contains Pfam profiles
           PF00270: DEAD/DEAH box helicase, PF00271: Helicase
           conserved C-terminal domain; identical to cDNA DEAD box
           RNA helicase, RH11 GI:3775998
          Length = 612

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
 Frame = +2

Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQ 400
           LL  RD++A AQ+G+GKTA F   I+  I  D  +   +        A+IL+PTRELA Q
Sbjct: 185 LLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQ 244

Query: 401 IQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 505
           I             K     GGT + + +R+LE G
Sbjct: 245 IHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERG 279



 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
 Frame = +1

Query: 505 CYVXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADV---- 672
           C + V TPGR+ D++ R  +    I+   LDEAD ML  GF  Q   + + +        
Sbjct: 280 CDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVR 339

Query: 673 QVILLSAT 696
           Q +L SAT
Sbjct: 340 QTMLFSAT 347


>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
           non-consensus acceptor splice site AT at exon 2; similar
           to DEAD box helicase protein GB:NP_006764 from [Homo
           sapiens], contains Pfam profile: PF00270  DEAD/DEAH box
           helicase
          Length = 568

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
 Frame = +2

Query: 251 LLQGRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQIQKVVI 418
           LL+G+DV+  A++G+GKT  F   ++ +L +   S R     +++ PTRELA Q + V  
Sbjct: 123 LLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTGVIVICPTRELAIQTKNVAE 182

Query: 419 ALGDHLNAKCHACIGGTNVREDIRQLESG 505
            L  H +      IGG N R + +++ SG
Sbjct: 183 ELLKHHSQTVSMVIGGNNRRSEAQRIASG 211



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +1

Query: 517 VGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQVILLSA 693
           + TPGR+ D +   +A     +K  V+DEAD +L   F +  + + K+L    Q  L SA
Sbjct: 216 IATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILPKTRQTALFSA 275

Query: 694 T 696
           T
Sbjct: 276 T 276


>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
           to RNA helicase GB:A57514 GI:897915 from [Rattus
           norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain
          Length = 989

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
 Frame = +2

Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQ----ALILAPTRELAQQIQKVV 415
           ++ GRD I  A++G+GKT  F + +L+ I D    E       L++APTREL QQI   +
Sbjct: 430 IMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDI 489

Query: 416 IALGDHLNAKCHACIGGTNVREDIRQLESG 505
                 L   C    GG+ V + I +L+ G
Sbjct: 490 RKFSKALGIICVPVYGGSGVAQQISELKRG 519



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = +1

Query: 511 VXVGTPGRVYDMI---TRRALHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQVI 681
           + V TPGR+ D++   + +  +   +   V+DEAD M   GF  Q   + + +  D Q +
Sbjct: 522 IVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTV 581

Query: 682 LLSAT 696
           L SAT
Sbjct: 582 LFSAT 586


>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
           putative (RH30) strong similarity to ethylene-responsive
           RNA helicase [Lycopersicon esculentum] GI:5669638;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain
          Length = 591

 Score = 50.8 bits (116), Expect = 9e-07
 Identities = 34/90 (37%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
 Frame = +2

Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVI 418
           L+GRD+I  A++G+GKT  + +  L  +    R  Q      LILAPTRELA QIQ+   
Sbjct: 200 LKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESR 259

Query: 419 ALGDHLNAKCHACIGGTNVREDIRQLESGV 508
             G     +     GG      IR L  GV
Sbjct: 260 KFGLRSGVRSTCIYGGAPKGPQIRDLRRGV 289



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 23/62 (37%), Positives = 33/62 (53%)
 Frame = +1

Query: 511 VXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQVILLS 690
           + + TPGR+ DM+  +  +   +   VLDEAD ML  GF  Q   +   +  D Q +L S
Sbjct: 291 IVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWS 350

Query: 691 AT 696
           AT
Sbjct: 351 AT 352


>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
           putative (RH30) strong similarity to ethylene-responsive
           RNA helicase [Lycopersicon esculentum] GI:5669638;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain
          Length = 484

 Score = 50.8 bits (116), Expect = 9e-07
 Identities = 34/90 (37%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
 Frame = +2

Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVI 418
           L+GRD+I  A++G+GKT  + +  L  +    R  Q      LILAPTRELA QIQ+   
Sbjct: 200 LKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESR 259

Query: 419 ALGDHLNAKCHACIGGTNVREDIRQLESGV 508
             G     +     GG      IR L  GV
Sbjct: 260 KFGLRSGVRSTCIYGGAPKGPQIRDLRRGV 289



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 23/62 (37%), Positives = 33/62 (53%)
 Frame = +1

Query: 511 VXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQVILLS 690
           + + TPGR+ DM+  +  +   +   VLDEAD ML  GF  Q   +   +  D Q +L S
Sbjct: 291 IVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWS 350

Query: 691 AT 696
           AT
Sbjct: 351 AT 352


>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
           identical to RNA helicase [Arabidopsis thaliana]
           GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain
          Length = 671

 Score = 50.8 bits (116), Expect = 9e-07
 Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
 Frame = +1

Query: 511 VXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFXDQXHDVXKML--SADVQVIL 684
           + VGTPGR+ D I R+ L  + ++  VLDEADEML  GF +    +   +  S  VQ +L
Sbjct: 227 IVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDSTKVQTLL 286

Query: 685 LSATM 699
            SAT+
Sbjct: 287 FSATL 291



 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
 Frame = +2

Query: 233 ATRNNALLQGRDVIAQAQSGTGKTATFSISILQQIDTSI----------RECQALILAPT 382
           A+  + +L G D++ +A++G GKT  F + IL+ +              R    L+L PT
Sbjct: 124 ASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPT 183

Query: 383 RELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 508
           RELA+Q+     A G  L        GG +      +L+ GV
Sbjct: 184 RELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGV 225


>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
           helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
          Length = 542

 Score = 50.8 bits (116), Expect = 9e-07
 Identities = 22/64 (34%), Positives = 36/64 (56%)
 Frame = +1

Query: 508 YVXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQVILL 687
           ++ V TPGR+ D++ ++ +  +  +L  LDEAD ++  GF D    V     +  Q +L 
Sbjct: 231 HIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLF 290

Query: 688 SATM 699
           SATM
Sbjct: 291 SATM 294



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 14/100 (14%)
 Frame = +2

Query: 251 LLQGRDVIAQAQSGTGKTATFSISIL-----QQIDTSIRECQ---ALILAPTRELAQQ-- 400
           +L GRD+I  A +G+GKT  F + ++     ++I   I   +   AL++ P+RELA+Q  
Sbjct: 131 VLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTY 190

Query: 401 --IQKVVIALGD--HLNAKCHACIGGTNVREDIRQLESGV 508
             +++ V +L +  +   +   CIGG ++R  +  ++ GV
Sbjct: 191 DVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGV 230


>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
           similar to ethylene-responsive RNA helicase GI:5669638
           from [Lycopersicon esculentum]; contains Pfam profiles
           PF00270: DEAD/DEAH box helicase, PF00271: Helicase
           conserved C-terminal domain
          Length = 501

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
 Frame = +2

Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQA-----LILAPTRELAQQIQKVVI 418
           ++GRD+I  A++G+GKT ++ +  +  ++             L+LAPTRELA QIQ+   
Sbjct: 134 MKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEAS 193

Query: 419 ALGDHLNAKCHACIGGTNVREDIRQLESGV 508
             G     K     GG      +R L+ GV
Sbjct: 194 KFGSSSKIKTTCIYGGVPKGPQVRDLQKGV 223



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 22/62 (35%), Positives = 31/62 (50%)
 Frame = +1

Query: 511 VXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQVILLS 690
           + + TPGR+ DM+     +   +   VLDEAD ML  GF  Q   +   +  D Q +  S
Sbjct: 225 IVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWS 284

Query: 691 AT 696
           AT
Sbjct: 285 AT 286


>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
           to p68 RNA helicase [Schizosaccharomyces pombe]
           GI:173419
          Length = 537

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
 Frame = +2

Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIREC---------QALILAPTRELAQQI 403
           LL GRD+I  A++G+GKT  F I  +  +    ++            L+L+PTRELA QI
Sbjct: 148 LLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQI 207

Query: 404 QKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 508
             V+   G+    K     GG++    I  + SGV
Sbjct: 208 SDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGV 242



 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 22/62 (35%), Positives = 34/62 (54%)
 Frame = +1

Query: 511 VXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQVILLS 690
           + +GTPGR+ D+I    L  + +   VLDEAD ML  GF +    +    +   Q+++ S
Sbjct: 244 IVIGTPGRLRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFS 303

Query: 691 AT 696
           AT
Sbjct: 304 AT 305


>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
           to D-E-A-D box protein [Drosophila melanogaster]
           GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 512

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 23/79 (29%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
 Frame = +2

Query: 263 RDVIAQAQSGTGKTATFSISILQQI-DTSIRECQALILAPTRELAQQIQKVVIALGDHLN 439
           RD+   + +G+GKT ++++ I+Q +    +R  +AL++ PTR+LA Q++ V  A+   + 
Sbjct: 63  RDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQVKDVFDAIAPAVG 122

Query: 440 AKCHACIGGTNVREDIRQL 496
               + +G +++  +I QL
Sbjct: 123 LSVGSAVGQSSIAGEISQL 141


>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 
          Length = 593

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
 Frame = +1

Query: 499 EWCYVXVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQ 675
           E C V +GTPGR+ D++ R   L    +++ +LDEAD +L  GF  Q + +   L    +
Sbjct: 141 EGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRR 200

Query: 676 VILLSAT 696
             L SAT
Sbjct: 201 TGLFSAT 207



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 9/102 (8%)
 Frame = +2

Query: 221 FCNP--ATRNNALLQGRDVIAQAQSGTGKTATFSISILQQIDTSI------RECQALILA 376
           FC P  A     L   +DV   A +G+GKT  F + +++ +  S        +   +I++
Sbjct: 38  FCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPPKPHQVMGVIIS 97

Query: 377 PTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQLE 499
           PTREL+ QI  V       L N      +GG  V+ D++ +E
Sbjct: 98  PTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIE 139


>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
           RNA helicase [Arabidopsis thaliana] GI:3776023; contains
           Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
           Helicase conserved C-terminal domain
          Length = 563

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 9/92 (9%)
 Frame = +2

Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELA-QQI 403
           +LQG+D++A+A++GTGKT  F +  ++ +        D        L++ PTRELA Q  
Sbjct: 114 ILQGKDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAA 173

Query: 404 QKVVIALGDHLNAKCHACIGGTNVREDIRQLE 499
            +  I L  H +      IGGT +  + R+L+
Sbjct: 174 AEANILLKYHPSIGVQVVIGGTKLPTEQRRLQ 205



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = +1

Query: 505 CYVXVGTPGRVYDMITRRALHANT---IKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQ 675
           C + V TPGR+ D I   +  A     +K+ VLDEAD +L  GF  +   +   +    Q
Sbjct: 209 CQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIAAVPKQRQ 268

Query: 676 VILLSATM 699
             L SAT+
Sbjct: 269 TFLFSATV 276


>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
           similarity to RNA helicase RH26 [Arabidopsis thaliana]
           GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain; identical to cDNA DEAD box RNA helicase, RH26
           GI:3776024
          Length = 850

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
 Frame = +2

Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQ-I 403
           +LQG+DV+A+A++GTGKT  F +  ++ +        D+       L++ PTRELA Q  
Sbjct: 416 ILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAA 475

Query: 404 QKVVIALGDHLNAKCHACIGGTNVREDIRQLES 502
            +    L  H +      IGGT +  + R++++
Sbjct: 476 AEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQT 508



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = +1

Query: 505 CYVXVGTPGRVYDMITRRALHANT---IKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQ 675
           C + V TPGR+ D I   +  A     +K+ VLDEAD +L  GF      +   +    Q
Sbjct: 511 CQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQ 570

Query: 676 VILLSATM 699
             L SAT+
Sbjct: 571 TFLFSATV 578


>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
           RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain
          Length = 845

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 10/93 (10%)
 Frame = +2

Query: 254 LQGRDVIAQAQSGTGKTATFSI----SILQQIDT-----SIRECQALILAPTRELAQQIQ 406
           L G+D + +A++GTGK+  F +    ++L+ +++      +     LIL PTRELA QI 
Sbjct: 410 LDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQIA 469

Query: 407 KVVIA-LGDHLNAKCHACIGGTNVREDIRQLES 502
               A L +H        IGGT  R D ++LES
Sbjct: 470 AEGKALLKNHDGIGVQTLIGGTRFRLDQQRLES 502



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
 Frame = +1

Query: 499 EWCYVXVGTPGRVYDMITRRA---LHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSAD 669
           E C + + TPGR+ D I  ++        +KLF++DEAD +L  GF      +   L   
Sbjct: 503 EPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDVEKIIDCLPRQ 562

Query: 670 VQVILLSATM 699
            Q +L SAT+
Sbjct: 563 RQSLLFSATI 572


>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
           identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
          Length = 626

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 24/64 (37%), Positives = 43/64 (67%), Gaps = 6/64 (9%)
 Frame = +2

Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRE---CQALILAPTRELAQQIQKV 412
           +L+G+DV+A+A++G+GKT  + + +LQ++   D+  ++     A IL P+REL QQ+   
Sbjct: 80  ILEGKDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQVYTE 139

Query: 413 VIAL 424
           V +L
Sbjct: 140 VSSL 143



 Score = 35.9 bits (79), Expect = 0.029
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +1

Query: 568 ANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQVILLSAT 696
           + ++ + VLDEAD +LS G+ D    V  ++    Q +L+SAT
Sbjct: 198 SESLSILVLDEADLLLSYGYEDNLRSVTSIIPRRCQCLLMSAT 240



 Score = 32.7 bits (71), Expect = 0.27
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +3

Query: 138 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
           ++  ++F+++ L   L+R +   G EKP+ IQQ AI
Sbjct: 42  EEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAI 77


>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
           RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain
          Length = 798

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 12/95 (12%)
 Frame = +2

Query: 254 LQGRDVIAQAQSGTGKTATFSI----SILQQIDT-----SIRECQALILAPTRELAQQIQ 406
           L G+D + +A++GTGK+  F +    ++L+ +++      +    ALIL PTRELA QI 
Sbjct: 363 LDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQIA 422

Query: 407 ---KVVIALGDHLNAKCHACIGGTNVREDIRQLES 502
              K ++   D +  +    IGGT  + D ++LES
Sbjct: 423 AEGKALLKFHDGIGVQ--TLIGGTRFKLDQQRLES 455



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
 Frame = +1

Query: 499 EWCYVXVGTPGRVYDMITRRA---LHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSAD 669
           E C + + TPGR+ D I  ++        +KLF++DEAD +L  GF      +   L   
Sbjct: 456 EPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEKIIDCLPRQ 515

Query: 670 VQVILLSATM 699
            Q +L SAT+
Sbjct: 516 RQSLLFSATI 525


>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
           similarity to RNA helicase RH25 [Arabidopsis thaliana]
           GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain; identical to cDNA DEAD box RNA helicase, RH31
           GI:3776030
          Length = 522

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
 Frame = +2

Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQ-I 403
           +L+G+DV+A+A++GTGKT  F +  ++ +        D       AL++ PTRELA Q  
Sbjct: 88  ILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAA 147

Query: 404 QKVVIALGDHLNAKCHACIGGTNVREDIRQLES 502
            +    L  H +      IGGT +  + +++++
Sbjct: 148 TEANTLLKYHPSIGVQVVIGGTRLGLEQKRMQT 180



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = +1

Query: 505 CYVXVGTPGRVYDMITRR---ALHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQ 675
           C + V TPGR+ D I      A     +K+ VLDEAD +L  GF      +   +  + Q
Sbjct: 183 CQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIISAVPKERQ 242

Query: 676 VILLSATM 699
             L SAT+
Sbjct: 243 TFLFSATV 250


>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
           to ATP-dependent RNA helicase GB:6321111 from (S.
           cerevisiae)
          Length = 558

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = +1

Query: 499 EWCYVXVGTPGRVYDMITRRA-LHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQ 675
           E   + +GTPGR+ DM+ R   L    +++ +LDEAD +L  GF  Q + +   L    +
Sbjct: 141 EGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRR 200

Query: 676 VILLSAT 696
             L SAT
Sbjct: 201 TGLFSAT 207



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
 Frame = +2

Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTS------IRECQALILAPTRELAQQIQKV 412
           L   +DV+  A +G+GKT  F +  ++ I  S        +   +I++PTREL+ QI KV
Sbjct: 50  LCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKV 109

Query: 413 VIALGDHL-NAKCHACIGGTNVREDIRQLE 499
                  L N      +GG  V  D+  LE
Sbjct: 110 AEPFVSTLPNVNSVLLVGGREVEADMNTLE 139


>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
           Pfam profile: PF00270 DEAD/DEAH box helicase
          Length = 465

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = +1

Query: 499 EWCYVXVGTPGRVYDMITRRA-LHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQ 675
           E   + +GTPGR+ DM+ R   L    +++ +LDEAD +L  GF  Q + +   L    +
Sbjct: 134 EGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRR 193

Query: 676 VILLSAT 696
             L SAT
Sbjct: 194 TGLFSAT 200



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
 Frame = +2

Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSI------RECQALILAPTRELAQQIQKV 412
           L   +DV+  A +G+GKT  F +  ++ I  S        +   +I++PTREL+ QI KV
Sbjct: 51  LCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKV 110

Query: 413 VIALGDHLNAKCHACIGGTNVRED 484
             A+     AKC       N  E+
Sbjct: 111 ARAVRLDF-AKCREVEADMNTLEE 133


>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
           helicase -Mus musculus,PIR2:I84741
          Length = 621

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 23/96 (23%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
 Frame = +2

Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQI---------DTSIRECQALILAPTRELAQQ 400
           A+++ + V+  + +G+GKT  + + I+Q +          T  R  + ++L PTREL++Q
Sbjct: 145 AVMERKSVVLGSHTGSGKTLAYLLPIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQ 204

Query: 401 IQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 508
           + +V  ++  H   +     GG+ +R     L + +
Sbjct: 205 VYRVAKSISHHARFRSILVSGGSRIRPQEDSLNNAI 240



 Score = 37.5 bits (83), Expect = 0.009
 Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
 Frame = +1

Query: 517 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFXDQXHD--------VXKMLSADV 672
           VGTPGR+   I    +    I   VLDEAD M  RGF  +             K      
Sbjct: 244 VGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKFLAPLNQRALKTNDQGF 303

Query: 673 QVILLSATMLXMYWKYLD 726
           Q +L++ATM     K +D
Sbjct: 304 QTVLVTATMTMAVQKLVD 321


>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
           pentatricopeptide (PPR) repeat-containing protein
           contains Pfam profiles:  PF00271 helicase conserved
           C-terminal domain, PF01535 PPR repeat, PF00270:
           DEAD/DEAH box helicase
          Length = 1145

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 18/46 (39%), Positives = 27/46 (58%)
 Frame = +1

Query: 511 VXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFXDQXHDV 648
           + VGTPGR+ ++     LH +  +  VLDE DE+LS  F +  H +
Sbjct: 246 IVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELLSFNFREDIHRI 291



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 14/89 (15%)
 Frame = +2

Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQI-------------DTSIRECQALILAPTRE 388
           A+++G D + Q+ +G+GKT  + + IL +I             +    E QA+I+AP+RE
Sbjct: 143 AIIKGHDAVIQSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRE 202

Query: 389 LAQQI-QKVVIALGDHLNAKCHACIGGTN 472
           L  QI ++V   LG          +GG N
Sbjct: 203 LGMQIVREVEKLLGPVHRRMVQQLVGGAN 231


>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 
          Length = 739

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
 Frame = +2

Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ----ALILAPTRELAQQIQKVVIA 421
           L GRD++  A++G+GKT  F I IL+++       +     +I++PTRELA Q   V+  
Sbjct: 106 LCGRDILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLNK 165

Query: 422 LGDHLNAKCHACIGG 466
           +G          IGG
Sbjct: 166 VGKFHKFSAGLLIGG 180



 Score = 32.3 bits (70), Expect = 0.35
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +1

Query: 511 VXVGTPGRVYDMITRRA-LHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQVILL 687
           + V  PGR+   +          +++ +LDEAD +L   F  Q   +   L    Q +L 
Sbjct: 196 ILVCAPGRLLQHMDETPNFECPQLQILILDEADRVLDSAFKGQLDPIISQLPKHRQTLLF 255

Query: 688 SAT 696
           SAT
Sbjct: 256 SAT 258


>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
           Pfam profiles  PF00270:DEAD/DEAH box helicase and
           PF00271:  Helicase conserved C-terminal domain;
           identical to cDNA RH27 helicase, partial GI:4033334
          Length = 633

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
 Frame = +2

Query: 251 LLQGRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQIQKVVI 418
           L+ G DV+  A++G+GKT  F   ++ +L ++  + R     L++ PTRELA Q   V  
Sbjct: 188 LMMGEDVLGAARTGSGKTLAFLIPAVELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAK 247

Query: 419 ALGDHLNAKCHACIGGTNVREDIRQLESGV 508
            L  + +      IGG   + +   L  GV
Sbjct: 248 ELLKYHSQTVGKVIGGEKRKTEAEILAKGV 277



 Score = 37.1 bits (82), Expect = 0.012
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +1

Query: 517 VGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQVILLSA 693
           V TPGR+ D +          +K  V+DEAD +L + F +    +  +L    Q  L SA
Sbjct: 281 VATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKTRQTSLFSA 340

Query: 694 T 696
           T
Sbjct: 341 T 341


>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
           similar to RNA helicase GB:CAA09204 from [Arabidopsis
           thaliana]; identical to cDNA DEAD box RNA helicase, RH13
           GI:3776002
          Length = 832

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 20/106 (18%)
 Frame = +2

Query: 242 NNALLQGRDVIAQAQSGTGKTATFSISILQQ-IDTSIR----------ECQ--------- 361
           N A  QG+DVI  A++G+GKT  F + ILQ+ +D   +          E Q         
Sbjct: 222 NVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLR 281

Query: 362 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 499
           ALI+ PTRELA Q+ + +     +L+ K    +GG    +  R+L+
Sbjct: 282 ALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLK 327



 Score = 37.9 bits (84), Expect = 0.007
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
 Frame = +1

Query: 511 VXVGTPGRVYDMITRRALHA---NTIKLFVLDEADEMLSRGFXDQXHDVXKML 660
           + V TPGR++++++    H    +++  FVLDEAD M+ RG   +   +  +L
Sbjct: 332 IVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVERGHFRELQSILDLL 384


>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
           to RNA helicase involved in rRNA processing GB:6321267
           from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
           box domain
          Length = 541

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +2

Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQID-TSIRECQALILAPTRELAQQ 400
           LL GR+  A A +G+GKT  F   +L ++   S    +A+IL+P RELA Q
Sbjct: 175 LLSGRECFACAPTGSGKTFAFICPMLIKLKRPSTDGIRAVILSPARELAAQ 225



 Score = 35.9 bits (79), Expect = 0.029
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +1

Query: 502 WCYVXVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLS-ADVQV 678
           WC V + TP R+   I  + +  + ++  VLDE+D++  +    Q   V K  S   +  
Sbjct: 258 WCDVLISTPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVKACSNPSIIR 317

Query: 679 ILLSATM 699
            L SAT+
Sbjct: 318 SLFSATL 324


>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
           identical to GB:CAA09207, contains a DEAD/DEAH box
           family ATP-dependent helicas signature; identical to
           cDNA DEAD box RNA helicase, RH17 GI:3776008
          Length = 609

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
 Frame = +2

Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------ALILAPTRELAQQIQKV 412
           +L GRDV+  A +GTGKT  +   ++  +     +        AL++ PTREL  Q+ + 
Sbjct: 64  ILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYET 123

Query: 413 V 415
           +
Sbjct: 124 L 124


>At2g28600.1 68415.m03476 expressed protein 
          Length = 502

 Score = 35.1 bits (77), Expect = 0.050
 Identities = 14/58 (24%), Positives = 32/58 (55%)
 Frame = +1

Query: 517 VGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFXDQXHDVXKMLSADVQVILLS 690
           V TP R+ +++T + +  + + L V+DE   + S G+ +    + + +S+  Q I+ +
Sbjct: 251 VATPERLLEIVTLKGVDISNVSLLVIDELGSLCSGGYLNAVKSIKQAISSKHQTIVFN 308


>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
           Pfam profile: PF00270 DEAD/DEAH box helicase
          Length = 781

 Score = 34.7 bits (76), Expect = 0.066
 Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 10/96 (10%)
 Frame = +2

Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI--------DTSIREC-QALILAPTRELAQQI 403
           ++ G+  I   QSG+GKT  + + ++Q++          S   C + ++L PT ELA Q+
Sbjct: 408 VIDGKSCIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQV 467

Query: 404 QKVVIALG-DHLNAKCHACIGGTNVREDIRQLESGV 508
                ++    +  +     GG   R  +  LE GV
Sbjct: 468 LANCRSISKSGVPFRSMVVTGGFRQRTQLENLEQGV 503


>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
           similar to RNA helicase GI:3776015 from [Arabidopsis
           thaliana]; contains Pfam profiles PF00271: Helicase
           conserved C-terminal domain, PF00270: DEAD/DEAH box
           helicase; matches EST OAO811-2
          Length = 581

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 14/75 (18%)
 Frame = +2

Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ--------------ALILAPTR 385
           ++L G+DVI  A++G+GKT  +   I+ Q+  +  + +              +LIL P  
Sbjct: 113 SILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTNREERPFPLKNISLILCPNV 172

Query: 386 ELAQQIQKVVIALGD 430
            L +Q+ ++V  L D
Sbjct: 173 MLCEQVVRMVNGLVD 187


>At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 691

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/53 (26%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
 Frame = +2

Query: 314 SISILQQIDTSIREC-QALILAPTRELA-QQIQKVVIALGDHLNAKCHACIGG 466
           +++ L+++  +++EC +A+ + P+   A Q++  + + LG+  NA+ H C  G
Sbjct: 263 ALTALRRLGEAVKECLEAVRIDPSYSRAHQRLASLYLRLGEAENARRHICFSG 315


>At3g10020.1 68416.m01202 expressed protein
          Length = 149

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +3

Query: 66  GPSK--DQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQR 239
           GP +  D      PP MD G  + D +QV ++ DD+ +  EL++G      E P+ + + 
Sbjct: 83  GPDRMEDYEMQPDPPAMDEGDPNYDEEQVKKSGDDVAV--ELVKGEVEVAKEAPAGVARV 140

Query: 240 AIMP 251
            + P
Sbjct: 141 EVDP 144


>At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger)
           family protein / ankyrin repeat family protein contains
           Pfam profile: PF00097 zinc finger, C3HC4 type (RING
           finger) and Pfam profile: PF00023 ankyrin repeat
          Length = 376

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 365 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT 469
           LILA T +    + K ++ LG ++NA    C GGT
Sbjct: 46  LILACTNDDLYDVAKTLLELGSNVNAYRSGCNGGT 80


>At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly
           identical to DNA Helicase [Arabidopsis thaliana]
           GI:11121445
          Length = 705

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = +2

Query: 245 NALLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAL 424
           NA++ GRDV+    +G GK      S+  Q+   +R    L+++P   L Q     + AL
Sbjct: 99  NAIMTGRDVLVIMAAGGGK------SLCYQLPAMLRGGTTLVVSPLLSLIQDQVMGLAAL 152

Query: 425 G 427
           G
Sbjct: 153 G 153


>At1g15140.3 68414.m01810 oxidoreductase NAD-binding
           domain-containing protein Contains Pfam profile PF00175:
           Oxidoreductase NAD-binding domain; ESTs gb|H76345 and
           gb|AA651465 come from this gene
          Length = 271

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -3

Query: 668 SADNILXTSXIWSLKPLDNISSASSRTKSLMVLA*SARRVIISYTRPG 525
           SA  +   + +W+  PL  I SA+     + +   +A  ++ SYTRPG
Sbjct: 47  SAAAVRQDASLWTPAPLSLIESAAESLFHISIDISNAPDLVASYTRPG 94


>At1g15140.2 68414.m01809 oxidoreductase NAD-binding
           domain-containing protein Contains Pfam profile PF00175:
           Oxidoreductase NAD-binding domain; ESTs gb|H76345 and
           gb|AA651465 come from this gene
          Length = 271

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -3

Query: 668 SADNILXTSXIWSLKPLDNISSASSRTKSLMVLA*SARRVIISYTRPG 525
           SA  +   + +W+  PL  I SA+     + +   +A  ++ SYTRPG
Sbjct: 47  SAAAVRQDASLWTPAPLSLIESAAESLFHISIDISNAPDLVASYTRPG 94


>At1g15140.1 68414.m01808 oxidoreductase NAD-binding
           domain-containing protein Contains Pfam profile PF00175:
           Oxidoreductase NAD-binding domain; ESTs gb|H76345 and
           gb|AA651465 come from this gene
          Length = 295

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -3

Query: 668 SADNILXTSXIWSLKPLDNISSASSRTKSLMVLA*SARRVIISYTRPG 525
           SA  +   + +W+  PL  I SA+     + +   +A  ++ SYTRPG
Sbjct: 47  SAAAVRQDASLWTPAPLSLIESAAESLFHISIDISNAPDLVASYTRPG 94


>At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 682

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
 Frame = +2

Query: 332 QIDTSIREC-QALILAPTRELA-QQIQKVVIALGDHLNAKCHACIGG 466
           +++ +++EC +A+   P+   A Q++  + + LG+  NA+ H C+ G
Sbjct: 260 RLEEAVKECLEAVRCDPSYARAHQRLASLYLRLGEAENARRHLCVSG 306


>At1g76010.1 68414.m08825 expressed protein
          Length = 350

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
 Frame = +3

Query: 21  SSERRSEDWPEDSK---NGPSKDQGSYDGPPGMDPG 119
           S  R   D P   +   +GPS+ +G YDGP G   G
Sbjct: 282 SQGRGGYDGPSQGRGGYDGPSQGRGGYDGPQGRGRG 317


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,723,758
Number of Sequences: 28952
Number of extensions: 361337
Number of successful extensions: 1246
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -