Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0814
(782 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1952.08c |||pyridoxamine 5'-phosphate oxidase |Schizosacchar... 31 0.25
SPBC13G1.02 |||mannose-1-phosphate guanyltransferase |Schizosacc... 28 1.7
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc... 27 3.0
SPBC11G11.01 |fis1||mitochondrial fission protein Fis1 |Schizosa... 27 3.0
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 26 5.3
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 26 5.3
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 26 5.3
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 26 5.3
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 26 7.0
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces... 25 9.3
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 25 9.3
>SPAC1952.08c |||pyridoxamine 5'-phosphate oxidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 30.7 bits (66), Expect = 0.25
Identities = 23/100 (23%), Positives = 41/100 (41%)
Frame = +2
Query: 338 EFPDIFFPRTASTKRHISSVSGPLDEHSNDVLFFFDMPEALSLHLTPFSPWFCLTPSKGQ 517
EFP R S+ ++I + D+ + ++ F +P + P+ C+ S G+
Sbjct: 10 EFPSQI-KRCLSSSKYIQLATCFHDQPHSSLMTFTYLPAGSA---APYEVEDCIILSTGE 65
Query: 518 QFLLTFGIFLNSRLHSFYHCWSPNRPRATTS*PVIYTRVF 637
F I N R+ H W+ NR +YT ++
Sbjct: 66 NSKKYFNISSNPRVSLLVHDWTTNRQETDPDASSLYTLLY 105
>SPBC13G1.02 |||mannose-1-phosphate guanyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 414
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -3
Query: 516 WPLDGVKQNHGEKGVK*RLRASGISKKNRTSFECSSNGPETEEMWRFVE 370
+PL + H EK L A+ +SK++ ++F C P T + +V+
Sbjct: 123 FPLQELLNVHHEKKALVTLMATKVSKEDASNFGCLVEEPSTGRVLHYVD 171
>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
Mus81|Schizosaccharomyces pombe|chr 3|||Manual
Length = 608
Score = 27.1 bits (57), Expect = 3.0
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +1
Query: 1 PVLCALRSMSWRRILLEYPVPVIEHGMRNRFH 96
P +CA W LE +P+ H +N H
Sbjct: 58 PTICAKLEKKWNAYCLENNIPISTHNEQNDSH 89
>SPBC11G11.01 |fis1||mitochondrial fission protein Fis1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 704 NLNWARNRNDATQELQHGL 760
NL WA R+D+TQ +Q GL
Sbjct: 45 NLAWALVRSDSTQHVQQGL 63
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 26.2 bits (55), Expect = 5.3
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -2
Query: 142 KNECSCVSKYSPDEPCGT 89
+ +C CV K+SPD C +
Sbjct: 243 EKDCRCVRKFSPDGSCNS 260
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 26.2 bits (55), Expect = 5.3
Identities = 22/79 (27%), Positives = 34/79 (43%)
Frame = -2
Query: 763 KKTVLQFLRCIVAVTRPIQIFNILKILNITKRFVYRTIKRYNEDSSVDDRLRSGRPRSVR 584
K T+L+ + V RP +F LK+ N+ K + +DS+ D S
Sbjct: 77 KNTILEEILESFKVIRPT-LFEFLKVENVPKPVLQAPETVIAQDSASGDEEWEDDLASNS 135
Query: 583 TPAVIKAVKARIQKNPKRK 527
+PA I +R K KR+
Sbjct: 136 SPASIAKKTSRDSKKRKRE 154
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 26.2 bits (55), Expect = 5.3
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -3
Query: 72 FNNRHWVFQQDSAPAHRAKSTQDW 1
FNN +W ++++ AH A +W
Sbjct: 1280 FNNEYWKIREEAGEAHLAGKEFEW 1303
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 26.2 bits (55), Expect = 5.3
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Frame = -2
Query: 772 WTLKKTVLQFLRCIV----AVTRPIQIFNILKILNITKRFVYRTIKRYNEDSSVDDRLRS 605
+TL+ L C+V VTR +F LK + T T+ + +DSSV+ ++
Sbjct: 297 FTLRDLRQSHLNCLVRVSGVVTRRTGLFPQLKYIRFTCTKCGATLGPFFQDSSVEVKISF 356
Query: 604 GRPRSVRTPAVIKA 563
S R P VI +
Sbjct: 357 CHNCSSRGPFVINS 370
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 25.8 bits (54), Expect = 7.0
Identities = 9/39 (23%), Positives = 18/39 (46%)
Frame = +2
Query: 647 FDGTINESFGYIQNFQYVKNLNWARNRNDATQELQHGLL 763
+D T + ++ Y + +NW + +LQHG +
Sbjct: 274 YDFTFERKYTKVERIAYSRWMNWIKWEQSDPLDLQHGTM 312
>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 735
Score = 25.4 bits (53), Expect = 9.3
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -2
Query: 643 YNEDSSVDDRLRSGRPRSVRTPAVIKAVKARIQ-KNPKRKQKL 518
Y++D+ + R+ +GRPR++ T A + KN +R+ L
Sbjct: 30 YSKDTDLSTRVSAGRPRTLSTSMEASAAPTIPELKNLRRRGSL 72
>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1064
Score = 25.4 bits (53), Expect = 9.3
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = +2
Query: 560 HSFYHCWSPNRPRATTS*PVIYTRVFIVSFDGTIN--ESFGYIQNFQYVKNLNWARNRND 733
HS+ CW + P + P + RV ++ + N + QN + + NW +N D
Sbjct: 391 HSYPFCWRSDTPLIYRAVPSWFVRVKEITNEMVENVMSTHWVPQNIRDKRFANWLKNARD 450
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,400,842
Number of Sequences: 5004
Number of extensions: 75168
Number of successful extensions: 244
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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