BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0814 (782 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF098501-8|AAC67403.1| 459|Caenorhabditis elegans Hypothetical ... 63 2e-10 U23174-5|AAC46711.1| 329|Caenorhabditis elegans Hypothetical pr... 36 0.043 AF106576-3|AAK68401.1| 329|Caenorhabditis elegans Hypothetical ... 36 0.043 AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormo... 36 0.043 AF101318-3|AAK68598.1| 336|Caenorhabditis elegans Seven tm rece... 32 0.40 Z81079-3|CAB03083.2| 588|Caenorhabditis elegans Hypothetical pr... 30 2.1 U80953-3|AAB52554.1| 350|Caenorhabditis elegans Abnormal dauer ... 30 2.1 U72884-1|AAC47389.1| 350|Caenorhabditis elegans DAF-7 protein. 30 2.1 U72883-1|AAC47390.1| 350|Caenorhabditis elegans dauer larva dev... 30 2.1 Z69634-3|CAA93454.4| 553|Caenorhabditis elegans Hypothetical pr... 29 3.7 AC006747-1|AAF60509.1| 311|Caenorhabditis elegans Hypothetical ... 29 5.0 U39743-1|AAA80436.2| 314|Caenorhabditis elegans Hypothetical pr... 28 6.6 U29097-9|AAA68416.2| 343|Caenorhabditis elegans Hypothetical pr... 28 6.6 AF125450-4|AAD12818.1| 343|Caenorhabditis elegans Hypothetical ... 28 6.6 AF016682-7|AAB66191.2| 343|Caenorhabditis elegans Hypothetical ... 28 6.6 Z69635-6|CAA93461.1| 695|Caenorhabditis elegans Hypothetical pr... 28 8.7 Z49207-9|CAA89068.2| 379|Caenorhabditis elegans Hypothetical pr... 28 8.7 AL110479-28|CAJ76967.1| 213|Caenorhabditis elegans Hypothetical... 28 8.7 AL110479-27|CAB60322.2| 333|Caenorhabditis elegans Hypothetical... 28 8.7 >AF098501-8|AAC67403.1| 459|Caenorhabditis elegans Hypothetical protein H28G03.4 protein. Length = 459 Score = 62.9 bits (146), Expect = 2e-10 Identities = 31/79 (39%), Positives = 44/79 (55%) Frame = -3 Query: 237 RVQRGHFPSSLMVWLGVSYWGLTEVHFCEKGVKTNAVVYQNTVLTNLVEPVSHTMFNNRH 58 RVQR +P +MV+ G++ G T + F +G+K N Y + + T L+ P F Sbjct: 246 RVQRTGYPKGIMVFAGITANGKTPLIFVPQGIKVNGNNYLDMLKTELM-PWVKKHFKKTK 304 Query: 57 WVFQQDSAPAHRAKSTQDW 1 W FQQD APAH+ K+ Q W Sbjct: 305 WTFQQDGAPAHKHKNVQAW 323 Score = 56.4 bits (130), Expect = 2e-08 Identities = 26/60 (43%), Positives = 39/60 (65%) Frame = -1 Query: 449 AYRRKTGHRLNARLMDPRLKRCGALLKRYAGKKYREILFSDEKIFTVEESYNKQNDKVYA 270 AY++ T L+ R R LL+R+ +R++LF+DEKIF +E+S+N QND+VYA Sbjct: 180 AYKKSTCQFLSEAAKIKRKDRAMNLLRRFRNGAHRKVLFTDEKIFCIEQSFNTQNDRVYA 239 >U23174-5|AAC46711.1| 329|Caenorhabditis elegans Hypothetical protein R10H1.3 protein. Length = 329 Score = 35.5 bits (78), Expect = 0.043 Identities = 21/70 (30%), Positives = 37/70 (52%) Frame = -3 Query: 210 SLMVWLGVSYWGLTEVHFCEKGVKTNAVVYQNTVLTNLVEPVSHTMFNNRHWVFQQDSAP 31 ++MVW + E+ F K N+ YQN + L + + H ++ + + FQQD+A Sbjct: 179 TVMVWGAFTEKKKLEIQFVSS--KMNSTDYQNVLELELSKYLRH--YSRKDFRFQQDNAT 234 Query: 30 AHRAKSTQDW 1 H + ST+D+ Sbjct: 235 IHVSNSTRDY 244 >AF106576-3|AAK68401.1| 329|Caenorhabditis elegans Hypothetical protein W07E6.6 protein. Length = 329 Score = 35.5 bits (78), Expect = 0.043 Identities = 21/70 (30%), Positives = 37/70 (52%) Frame = -3 Query: 210 SLMVWLGVSYWGLTEVHFCEKGVKTNAVVYQNTVLTNLVEPVSHTMFNNRHWVFQQDSAP 31 ++MVW + E+ F K N+ YQN + L + + H ++ + + FQQD+A Sbjct: 179 TVMVWGAFTEKKKLEIQFVSS--KMNSTDYQNVLELELSKYLRH--YSRKDFRFQQDNAT 234 Query: 30 AHRAKSTQDW 1 H + ST+D+ Sbjct: 235 IHVSNSTRDY 244 >AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormone receptor familyprotein 88, isoform b protein. Length = 459 Score = 35.5 bits (78), Expect = 0.043 Identities = 21/70 (30%), Positives = 37/70 (52%) Frame = -3 Query: 210 SLMVWLGVSYWGLTEVHFCEKGVKTNAVVYQNTVLTNLVEPVSHTMFNNRHWVFQQDSAP 31 ++MVW + E+ F K N+ YQN + L + + H ++ + + FQQD+A Sbjct: 309 TVMVWGAFTEKKKLEIQFVSS--KMNSTDYQNVLELELSKYLRH--YSRKDFRFQQDNAT 364 Query: 30 AHRAKSTQDW 1 H + ST+D+ Sbjct: 365 IHVSNSTRDY 374 >AF101318-3|AAK68598.1| 336|Caenorhabditis elegans Seven tm receptor protein 69 protein. Length = 336 Score = 32.3 bits (70), Expect = 0.40 Identities = 17/49 (34%), Positives = 28/49 (57%) Frame = +3 Query: 255 FFTTVCVHLIILFVVALFYGKNFFIRKKNFPIFFSRVPLQQSATSLQSR 401 FF + +LI++F+ A FY KN F K I+FS + + SA + ++ Sbjct: 18 FFASTFTNLILIFLTA-FYVKNLFGTYKRMVIYFSTLGIVFSALEITAK 65 >Z81079-3|CAB03083.2| 588|Caenorhabditis elegans Hypothetical protein F39H11.3 protein. Length = 588 Score = 29.9 bits (64), Expect = 2.1 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 5/75 (6%) Frame = -3 Query: 234 VQRGHFPSSLMVWLGVSY-----WGLTEVHFCEKGVKTNAVVYQNTVLTNLVEPVSHTMF 70 +QR + VWL + Y W + + H K K +V +N V L + +S + Sbjct: 89 LQRVFLTNEKKVWLLLDYAEHDLWHVIKHHRTAKSKKVPIMVPRNMVKNILFQILSGMHY 148 Query: 69 NNRHWVFQQDSAPAH 25 + +WV +D PA+ Sbjct: 149 LHSNWVLHRDLKPAN 163 >U80953-3|AAB52554.1| 350|Caenorhabditis elegans Abnormal dauer formation protein 7 protein. Length = 350 Score = 29.9 bits (64), Expect = 2.1 Identities = 18/68 (26%), Positives = 31/68 (45%) Frame = -1 Query: 425 RLNARLMDPRLKRCGALLKRYAGKKYREILFSDEKIFTVEESYNKQNDKVYAHSSEERAT 246 +LN + LK +K + YR++L DE+ VE S+ D Y + + Sbjct: 49 QLNMKEAPKGLKPMDPEMKSVYLEMYRDLLEKDEQDMGVEMSFYTAKDPSYGENPSQLVA 108 Query: 245 VFRVSNEV 222 F V+N++ Sbjct: 109 KFDVTNDL 116 >U72884-1|AAC47389.1| 350|Caenorhabditis elegans DAF-7 protein. Length = 350 Score = 29.9 bits (64), Expect = 2.1 Identities = 18/68 (26%), Positives = 31/68 (45%) Frame = -1 Query: 425 RLNARLMDPRLKRCGALLKRYAGKKYREILFSDEKIFTVEESYNKQNDKVYAHSSEERAT 246 +LN + LK +K + YR++L DE+ VE S+ D Y + + Sbjct: 49 QLNMKEAPKGLKPMDPEMKSVYLEMYRDLLEKDEQDMGVEMSFYTAKDPSYGENPSQLVA 108 Query: 245 VFRVSNEV 222 F V+N++ Sbjct: 109 KFDVTNDL 116 >U72883-1|AAC47390.1| 350|Caenorhabditis elegans dauer larva development regulatorygrowth factor protein. Length = 350 Score = 29.9 bits (64), Expect = 2.1 Identities = 18/68 (26%), Positives = 31/68 (45%) Frame = -1 Query: 425 RLNARLMDPRLKRCGALLKRYAGKKYREILFSDEKIFTVEESYNKQNDKVYAHSSEERAT 246 +LN + LK +K + YR++L DE+ VE S+ D Y + + Sbjct: 49 QLNMKEAPKGLKPMDPEMKSVYLEMYRDLLEKDEQDMGVEMSFYTAKDPSYGENPSQLVA 108 Query: 245 VFRVSNEV 222 F V+N++ Sbjct: 109 KFDVTNDL 116 >Z69634-3|CAA93454.4| 553|Caenorhabditis elegans Hypothetical protein B0001.5 protein. Length = 553 Score = 29.1 bits (62), Expect = 3.7 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = +2 Query: 539 IFLNSRLHSFYHCWSPNRPRAT 604 I +++L FY WSP+RPR+T Sbjct: 171 ITTHAKLGDFYLVWSPSRPRST 192 >AC006747-1|AAF60509.1| 311|Caenorhabditis elegans Hypothetical protein Y39A3A.1 protein. Length = 311 Score = 28.7 bits (61), Expect = 5.0 Identities = 14/28 (50%), Positives = 19/28 (67%) Frame = -2 Query: 676 TKRFVYRTIKRYNEDSSVDDRLRSGRPR 593 T +F + IK+ N D +DD+ RSGRPR Sbjct: 14 TMKFWFEKIKKKNYD--LDDKPRSGRPR 39 >U39743-1|AAA80436.2| 314|Caenorhabditis elegans Hypothetical protein R173.2 protein. Length = 314 Score = 28.3 bits (60), Expect = 6.6 Identities = 14/45 (31%), Positives = 26/45 (57%) Frame = -2 Query: 664 VYRTIKRYNEDSSVDDRLRSGRPRSVRTPAVIKAVKARIQKNPKR 530 +++ IK+Y + SV R+ GRPR V T + + + +++P R Sbjct: 13 IWKVIKKYQTEKSVALRISPGRPR-VTTHRMDRNILRSAREDPHR 56 >U29097-9|AAA68416.2| 343|Caenorhabditis elegans Hypothetical protein F18C5.7 protein. Length = 343 Score = 28.3 bits (60), Expect = 6.6 Identities = 14/45 (31%), Positives = 26/45 (57%) Frame = -2 Query: 664 VYRTIKRYNEDSSVDDRLRSGRPRSVRTPAVIKAVKARIQKNPKR 530 +++ IK+Y + SV R+ GRPR V T + + + +++P R Sbjct: 42 IWKVIKKYQTEKSVALRISPGRPR-VTTHRMDRNILRSAREDPHR 85 >AF125450-4|AAD12818.1| 343|Caenorhabditis elegans Hypothetical protein Y39F10A.4 protein. Length = 343 Score = 28.3 bits (60), Expect = 6.6 Identities = 14/45 (31%), Positives = 26/45 (57%) Frame = -2 Query: 664 VYRTIKRYNEDSSVDDRLRSGRPRSVRTPAVIKAVKARIQKNPKR 530 +++ IK+Y + SV R+ GRPR V T + + + +++P R Sbjct: 42 IWKVIKKYQTEKSVALRISPGRPR-VTTHRMDRNILRSAREDPHR 85 >AF016682-7|AAB66191.2| 343|Caenorhabditis elegans Hypothetical protein T07D3.8 protein. Length = 343 Score = 28.3 bits (60), Expect = 6.6 Identities = 14/45 (31%), Positives = 26/45 (57%) Frame = -2 Query: 664 VYRTIKRYNEDSSVDDRLRSGRPRSVRTPAVIKAVKARIQKNPKR 530 +++ IK+Y + SV R+ GRPR V T + + + +++P R Sbjct: 42 IWKVIKKYQTEKSVALRISPGRPR-VTTHRMDRNILRSAREDPHR 85 >Z69635-6|CAA93461.1| 695|Caenorhabditis elegans Hypothetical protein F19B6.4 protein. Length = 695 Score = 27.9 bits (59), Expect = 8.7 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%) Frame = -1 Query: 416 ARLMDPRLKRCGALLKRYAGKKYREILFSDEKIFTVEESYNKQNDK-VYAHS--SEERAT 246 A+ +D RCG + ++ + K F E+ YNK+ +K V H +E++T Sbjct: 328 AKQVDAFFGRCGYPIPKFVSSPDHFMRVISHKSFETEDDYNKRIEKIVLEHDIMKKEQST 387 Query: 245 VFRVSNEVIFHPRS 204 +S+ HP + Sbjct: 388 HSTLSSSRREHPET 401 >Z49207-9|CAA89068.2| 379|Caenorhabditis elegans Hypothetical protein R07E3.3 protein. Length = 379 Score = 27.9 bits (59), Expect = 8.7 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = +1 Query: 403 SIRRAFKRCPVFLRYARSPKSSFNTLFTVVLLNP 504 S+R F +C + R++ SP+ F + VV NP Sbjct: 76 SLRLTFDQCAIEKRHSTSPRGLFLSTNVVVAFNP 109 >AL110479-28|CAJ76967.1| 213|Caenorhabditis elegans Hypothetical protein Y105C5B.6b protein. Length = 213 Score = 27.9 bits (59), Expect = 8.7 Identities = 21/78 (26%), Positives = 31/78 (39%) Frame = +3 Query: 159 NVPLLSPNKKLPTIP*ARMENDLVGHAEYGCSFFTTVCVHLIILFVVALFYGKNFFIRKK 338 N L N K IP + EN + F TVC++LII + +F + K Sbjct: 50 NETQLYRNTKNGLIPRFKSENFIAVLFVIAGGFLATVCIYLIIAYCYLIFMLRKSSNAIK 109 Query: 339 NFPIFFSRVPLQQSATSL 392 N SR +++ L Sbjct: 110 NTQFHKSRAVIKKKEVKL 127 >AL110479-27|CAB60322.2| 333|Caenorhabditis elegans Hypothetical protein Y105C5B.6a protein. Length = 333 Score = 27.9 bits (59), Expect = 8.7 Identities = 21/78 (26%), Positives = 31/78 (39%) Frame = +3 Query: 159 NVPLLSPNKKLPTIP*ARMENDLVGHAEYGCSFFTTVCVHLIILFVVALFYGKNFFIRKK 338 N L N K IP + EN + F TVC++LII + +F + K Sbjct: 170 NETQLYRNTKNGLIPRFKSENFIAVLFVIAGGFLATVCIYLIIAYCYLIFMLRKSSNAIK 229 Query: 339 NFPIFFSRVPLQQSATSL 392 N SR +++ L Sbjct: 230 NTQFHKSRAVIKKKEVKL 247 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,685,315 Number of Sequences: 27780 Number of extensions: 416929 Number of successful extensions: 1303 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 1224 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1302 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1893203640 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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