Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0814
         (782 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21) ...    31   1.1  
At5g53550.1 68418.m06654 transporter, putative similar to iron-p...    29   3.5  
At4g36970.1 68417.m05239 remorin family protein contains Pfam do...    28   6.1  
At4g11220.1 68417.m01818 reticulon family protein (RTNLB2) simil...    28   6.1  
At5g22570.1 68418.m02636 WRKY family transcription factor contai...    28   8.0  
At4g34100.1 68417.m04838 zinc finger (C3HC4-type RING finger) fa...    28   8.0  
At3g30842.1 68416.m03968 ABC transporter protein, putative simil...    28   8.0  

>At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21)
           identical to ubiquitin-specific protease 21 GI:11993482
           [Arabidopsis thaliana]
          Length = 732

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 715 PIQIFNILKILNITKRFVYRTIKRYNEDSSVDDRLRSGRP 596
           P+   N L+I N +  ++YR  +RY E  S DD L    P
Sbjct: 104 PVSNNNHLRITNTSDSYLYRPPRRYIEYESDDDELNKMEP 143


>At5g53550.1 68418.m06654 transporter, putative similar to
           iron-phytosiderophore transporter protein yellow stripe
           1 [Zea mays] GI:10770865; contains Pfam profile PF03169:
           OPT oligopeptide transporter protein
          Length = 669

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 235 CPTRSFSILAHGMVGSFLLGLNRGTF 158
           C    +SI   G  GS+LLGLNR T+
Sbjct: 114 CAVACYSIAVGGGFGSYLLGLNRITY 139


>At4g36970.1 68417.m05239 remorin family protein contains Pfam
           domain, PF03763: Remorin, C-terminal region
          Length = 427

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 70  EHGMRNRFHKVRQDCILIHNCIRFYTFLTKMYLC*AP 180
           EH  +   H++ ++ + I + +R +TF+T    C AP
Sbjct: 380 EHEQQQGNHQISRNSVKITHLVRRHTFMTPFMTCFAP 416


>At4g11220.1 68417.m01818 reticulon family protein (RTNLB2) similar
           to SP|Q64548 Reticulon 1 (Neuroendocrine-specific
           protein) {Rattus norvegicus}; contains Pfam profile
           PF02453: Reticulon
          Length = 271

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +3

Query: 246 GC-SFFTTVCVHLIILFVVALFYGK 317
           GC SF T   + L++LF V LFY K
Sbjct: 205 GCYSFLTLAYIALVLLFTVPLFYDK 229


>At5g22570.1 68418.m02636 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 289

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -1

Query: 377 LLKRYAGKKYREILFSDEKIFTVEESYNKQNDKVYAHSSEERATVFRVSNEVIF-HPRSW 201
           ++K  A  +YREI  +D+    V E Y       Y  SS   +     +++++F +P SW
Sbjct: 222 IIKEQAIDQYREITSNDQDCQDVIEEYLSSPSGSYPPSSSSGSESADFNSDLLFDNPDSW 281


>At4g34100.1 68417.m04838 zinc finger (C3HC4-type RING finger) family
            protein contains Pfam profile: PF00097 zinc finger, C3HC4
            type (RING finger)
          Length = 1092

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 9/28 (32%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +1

Query: 31   WRR-ILLEYPVPVIEHGMRNRFHKVRQD 111
            W R ++L++ +P+++   R +F +VR+D
Sbjct: 926  WTRLVMLDHMLPIVDDSWRAKFERVRED 953


>At3g30842.1 68416.m03968 ABC transporter protein, putative similar
           to pleiotropic drug resistance like protein [Nicotiana
           tabacum] GI:20522008, ABC1 protein [Nicotiana
           plumbaginifolia] GI:14331118; contains Pfam profile
           PF00005: ABC transporter
          Length = 1406

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 539 IFLNSRLHSFYHCWSPNRPRATTS*PVIYTRVFIV 643
           +F   R  SFY  W+ + P +  + P+ +  VFIV
Sbjct: 579 VFYKQRHFSFYPSWAFSLPTSIITFPLSFVEVFIV 613


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,428,467
Number of Sequences: 28952
Number of extensions: 374883
Number of successful extensions: 1104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)