Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0813
         (758 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   4.6  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   8.1  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    21   8.1  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 66  SRNNTYTNNRLYHNH 110
           + NN  TNN+ +H+H
Sbjct: 311 NNNNAATNNQNHHHH 325


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/21 (38%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +2

Query: 680 SW-YLSMESSLISTISIDNIE 739
           +W YL+ E SL+  + I+N++
Sbjct: 424 AWLYLNNEGSLVYNVQIENLK 444


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 55  SIIRTIKVDFTITFHF 8
           S +  +K+DFT+ F+F
Sbjct: 77  SSLSEVKMDFTLDFYF 92


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,784
Number of Sequences: 336
Number of extensions: 3827
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20338724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)