Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0813
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb...    28   1.3  
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    27   2.2  
SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|c...    27   2.2  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   3.8  
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy...    27   3.8  

>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/34 (50%), Positives = 20/34 (58%)
 Frame = -3

Query: 633 VPLSTYKNNSSIDLTINLEHCKIPFNLYFRVYRS 532
           VPLS YKNN  I  TINL  C   +N+   V+ S
Sbjct: 98  VPLSYYKNN--ISGTINLIECMKKYNVRDFVFSS 129


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -3

Query: 600 IDLTINLEH-CKIPFNLYFRVY 538
           + LT+N E+ CK  FN+YF ++
Sbjct: 555 LQLTVNFENLCKTSFNMYFPIF 576


>SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 374

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 393 TSICISMSTTCRQKSTLELSEFCTSKKRIFHNLEYFYI 506
           T + +S +  C Q +  E+ EF +S      NLEYF +
Sbjct: 214 THVLMSENNECSQ-AIFEIPEFMSSINECIENLEYFIV 250


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/57 (21%), Positives = 31/57 (54%)
 Frame = +3

Query: 372 LLQKTIFTSICISMSTTCRQKSTLELSEFCTSKKRIFHNLEYFYI*YTGITSILTCT 542
           +LQK +++ + +++  TC +++   ++ F  +  RI H +E   + +  + S +  T
Sbjct: 574 ILQKIVYSDLPLTLMITCDKENDHVINRFRLANDRI-HEIELKPLSFNAVNSYVQAT 629


>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 623 ERGTNGSYFTVIIGLNTKSSWYLSMESSLISTISID 730
           +   NGS   V+ GL++   W +SME +  + +S++
Sbjct: 12  KHSVNGSNEFVLYGLSSMQGWRISMEDAHSAILSME 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,932,339
Number of Sequences: 5004
Number of extensions: 58088
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)