Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0813
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    26   0.44 
DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    26   0.44 
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    26   0.44 
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    26   0.44 
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    26   0.44 
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    26   0.44 
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    26   0.44 
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    26   0.44 
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    26   0.44 
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    26   0.44 
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    26   0.44 
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    25   0.77 
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    25   0.77 
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    23   2.4  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    23   2.4  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    23   2.4  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    23   2.4  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   2.4  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    23   3.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   7.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   9.5  

>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 63  VSRNNTYTNNRLYHNHYQKMK*LITSLNYNCNCK 164
           +S NN+ +NN  Y+N+Y        + NYN N K
Sbjct: 82  ISNNNSLSNNYNYNNNYNNY-----NNNYNTNYK 110


>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 63  VSRNNTYTNNRLYHNHYQKM-K*LITSLNYNCN 158
           +S NN+ +NN  Y+N+Y    K     L YN N
Sbjct: 82  ISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNIN 114


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 63  VSRNNTYTNNRLYHNHYQKM-K*LITSLNYNCN 158
           +S NN+ +NN  Y+N+Y    K     L YN N
Sbjct: 82  ISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNIN 114


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 63  VSRNNTYTNNRLYHNHYQKM-K*LITSLNYNCN 158
           +S NN+ +NN  Y+N+Y    K     L YN N
Sbjct: 82  ISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNIN 114


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 63  VSRNNTYTNNRLYHNHYQKM-K*LITSLNYNCN 158
           +S NN+ +NN  Y+N+Y    K     L YN N
Sbjct: 82  ISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNIN 114


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 63  VSRNNTYTNNRLYHNHYQKM-K*LITSLNYNCN 158
           +S NN+ +NN  Y+N+Y    K     L YN N
Sbjct: 82  ISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNIN 114


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 63  VSRNNTYTNNRLYHNHYQKM-K*LITSLNYNCN 158
           +S NN+ +NN  Y+N+Y    K     L YN N
Sbjct: 82  ISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNIN 114


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 63  VSRNNTYTNNRLYHNHYQKM-K*LITSLNYNCN 158
           +S NN+ +NN  Y+N+Y    K     L YN N
Sbjct: 82  ISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNIN 114


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 63  VSRNNTYTNNRLYHNHYQKM-K*LITSLNYNCN 158
           +S NN+ +NN  Y+N+Y    K     L YN N
Sbjct: 82  ISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNIN 114


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 63  VSRNNTYTNNRLYHNHYQKM-K*LITSLNYNCN 158
           +S NN+ +NN  Y+N+Y    K     L YN N
Sbjct: 315 ISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNIN 347


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 63  VSRNNTYTNNRLYHNHYQKM-K*LITSLNYNCN 158
           +S NN+ +NN  Y+N+Y    K     L YN N
Sbjct: 315 ISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNIN 347


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 63  VSRNNTYTNNRLYHNHYQKM-K*LITSLNYNCN 158
           +S NN  +NN  Y+N+Y    K     L YN N
Sbjct: 82  ISNNNPLSNNYNYNNNYNNYNKHNYNKLYYNIN 114


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 72  NNTYTNNRLYHNHYQKMK*LITSLNY 149
           NN Y N    +N+Y   K L  ++NY
Sbjct: 98  NNNYNNYNYNNNNYNNYKKLYYNINY 123


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 66  SRNNTYTNNRLYHNHYQKMK 125
           S  N Y NN   +N+Y+K++
Sbjct: 92  SNYNNYNNNNYNNNNYKKLQ 111


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 66  SRNNTYTNNRLYHNHYQKMK 125
           S  N Y NN   +N+Y+K++
Sbjct: 92  SNYNNYNNNNYNNNNYKKLQ 111


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 66  SRNNTYTNNRLYHNHYQKMK 125
           S  N Y NN   +N+Y+K++
Sbjct: 92  SNYNNYNNNNYNNNNYKKLQ 111


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 66  SRNNTYTNNRLYHNHYQKMK 125
           S  N Y NN   +N+Y+K++
Sbjct: 92  SNYNNYNNNNYNNNNYKKLQ 111


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +3

Query: 72  NNTYTNNRLYHNHY-QKMK*LITSLNY 149
           NN Y N   Y+N+Y    K L  ++NY
Sbjct: 331 NNNYNNYNNYNNNYNNNYKKLYYNINY 357


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 63  VSRNNTYTNNRLYHNHYQKMK*LITSLNY 149
           +S    + NN   +N+Y   K L  ++NY
Sbjct: 85  LSNKTIHNNNNYNNNNYNNYKKLYYNINY 113


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
 Frame = -1

Query: 740 IRYYRWIWWKL---TMTPSIDTNYFSYLI 663
           I YY   WWK+     TP+I    F++ I
Sbjct: 483 IGYYPCCWWKICWTITTPAICVGVFTFNI 511


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
 Frame = -1

Query: 740 IRYYRWIWWKL---TMTPSIDTNYFSYLI 663
           I YY   WWK+     TP+I    F++ I
Sbjct: 536 IGYYPCCWWKICWTITTPAICVGVFTFNI 564


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 503 YIIYRDHFHLDLYTLKYKLKGILQCS 580
           Y + R   H DLY+  Y   G+L  S
Sbjct: 768 YFLSRARHHDDLYSQSYAEVGVLFAS 793


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
          channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 55 SIIRTIKVDFTITFHF 8
          S +  +K+DFT+ F+F
Sbjct: 48 SSLSEVKMDFTLDFYF 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,269
Number of Sequences: 438
Number of extensions: 4993
Number of successful extensions: 34
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)