Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0813
         (758 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g39680.1 68415.m04868 expressed protein                             31   0.83 
At5g63930.1 68418.m08028 leucine-rich repeat transmembrane prote...    28   5.9  

>At2g39680.1 68415.m04868 expressed protein 
          Length = 84

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = -1

Query: 386 CFL*QLWS*SGLVFCLISNSY*Y*LK*FYSKFKSNRINIFVT----IHIC 249
           C L Q  S S L+FC+ SN+Y   LK + S  +S R+  F T     HIC
Sbjct: 5   CLLKQRLSRSILLFCIYSNTY-MGLKTYVSTIRSTRVTTFFTGIRLKHIC 53


>At5g63930.1 68418.m08028 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 1102

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = -3

Query: 699 SIDRYQLLFVFNPIITVKYDPLVPLSTYKNNSSIDLTINLEHCKIPFNLYF 547
           +I+  +LL++F   +T      V LST KN S +DL+IN     IP    +
Sbjct: 335 NIEGLELLYLFENQLTGTIP--VELSTLKNLSKLDLSINALTGPIPLGFQY 383


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,292,208
Number of Sequences: 28952
Number of extensions: 266932
Number of successful extensions: 465
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)