Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0812
         (534 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   1.3  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    22   3.9  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   6.8  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -1

Query: 381 LVYRLIRNEIGTPLLTFSLFNIDTIVGTFSLLLAISG 271
           LVY    +E   P+    L+N +T      L++++SG
Sbjct: 336 LVYYASLDETPNPVTNGKLYNFNTFAKLLILVVSLSG 372


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -1

Query: 198 VVQTYPCYNQPDQLKYLMIATRSPPDPPR 112
           V  T+P Y  PD  +Y  +      D PR
Sbjct: 179 VAATHPRYADPDDCQYFYVCING--DTPR 205


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -1

Query: 165 DQLKYLMIATRSPPDPP 115
           + + YL +   +PP PP
Sbjct: 719 ESISYLSMENNAPPPPP 735


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,355
Number of Sequences: 336
Number of extensions: 2466
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12992348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)