BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0812 (534 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 31 0.14 SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug... 26 4.1 SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 25 5.4 SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 5.4 SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 25 7.1 SPBC19C2.02 |pmt1||DNA methyltransferase homolog|Schizosaccharom... 25 7.1 SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1... 25 7.1 SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 7.1 SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 25 9.4 >SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosaccharomyces pombe|chr 1|||Manual Length = 745 Score = 30.7 bits (66), Expect = 0.14 Identities = 18/46 (39%), Positives = 26/46 (56%) Frame = +3 Query: 111 IEGDQEEIVLQSLNILIDLVDYNKDMSVQLLPILLYKISHDISPSI 248 I D ++ L +NIL L+D S Q+LP LLY I+ +PS+ Sbjct: 340 IASDSDDTCLLKINILSRLLDAQN--SSQILPELLYYINSHPNPSV 383 >SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ugo1|Schizosaccharomyces pombe|chr 1|||Manual Length = 421 Score = 25.8 bits (54), Expect = 4.1 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = +2 Query: 254 ECLKALPLMAKSKENVPTIVSILNKLKVNKGVPISF 361 +CLKALP S +PT+ + V+ +P++F Sbjct: 277 QCLKALPFYCPSSLILPTVCYVSLPPFVSSVLPLTF 312 >SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosaccharomyces pombe|chr 3|||Manual Length = 877 Score = 25.4 bits (53), Expect = 5.4 Identities = 10/21 (47%), Positives = 16/21 (76%) Frame = -3 Query: 484 ATSTSHFRSSGLPAPGSTNNS 422 ATS+ +F S+ PAP ++NN+ Sbjct: 226 ATSSPNFLSTSTPAPPNSNNA 246 >SPCC162.08c |nup211||nuclear pore complex associated protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 1837 Score = 25.4 bits (53), Expect = 5.4 Identities = 16/59 (27%), Positives = 29/59 (49%) Frame = +3 Query: 33 SDISSLDNAVKYXXLXQXLGXAMSQNIEGDQEEIVLQSLNILIDLVDYNKDMSVQLLPI 209 S + S++ A+K A QN+ D+E+ V + + I+ DL D + Q+L + Sbjct: 116 SSLKSVNEALKQAQDQNLKQTAQLQNLLSDKEKEVEKKITIIKDLKDALASSTHQVLEL 174 >SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 747 Score = 25.0 bits (52), Expect = 7.1 Identities = 9/32 (28%), Positives = 21/32 (65%) Frame = +3 Query: 102 SQNIEGDQEEIVLQSLNILIDLVDYNKDMSVQ 197 ++ +E + EEI+L LNI+ ++ N ++ ++ Sbjct: 454 NREVEEENEEILLVLLNIISSVIGRNAELDLE 485 >SPBC19C2.02 |pmt1||DNA methyltransferase homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 330 Score = 25.0 bits (52), Expect = 7.1 Identities = 10/31 (32%), Positives = 19/31 (61%) Frame = -1 Query: 423 PEGMESSGPGVSLRLVYRLIRNEIGTPLLTF 331 PE +E S V+ + +YRL+ N I ++++ Sbjct: 289 PESLEWSKSNVTEKCMYRLLGNSINVKVVSY 319 >SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 484 Score = 25.0 bits (52), Expect = 7.1 Identities = 9/27 (33%), Positives = 16/27 (59%) Frame = +2 Query: 359 FLISLYTSLSETPGPLLSIPSGVVG*P 439 F+ LY L+ PG + +P+ ++G P Sbjct: 52 FVSELYKGLTTNPGDVPMVPTWIIGTP 78 >SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 1261 Score = 25.0 bits (52), Expect = 7.1 Identities = 17/46 (36%), Positives = 23/46 (50%) Frame = -1 Query: 429 TTPEGMESSGPGVSLRLVYRLIRNEIGTPLLTFSLFNIDTIVGTFS 292 TTP +G VS RL LI + LL ++ FN+ GTF+ Sbjct: 639 TTPLLRHITGYLVSRRLEPELISPRVFGFLLEYAAFNVVQTEGTFT 684 >SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces pombe|chr 2|||Manual Length = 512 Score = 24.6 bits (51), Expect = 9.4 Identities = 10/20 (50%), Positives = 14/20 (70%) Frame = +2 Query: 368 SLYTSLSETPGPLLSIPSGV 427 ++Y +LSE PG L PSG+ Sbjct: 10 NIYLNLSEKPGKLRIAPSGL 29 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,055,109 Number of Sequences: 5004 Number of extensions: 40032 Number of successful extensions: 96 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 93 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 96 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 220420454 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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