Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0812
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    31   0.14 
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    26   4.1  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    25   5.4  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   5.4  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    25   7.1  
SPBC19C2.02 |pmt1||DNA methyltransferase homolog|Schizosaccharom...    25   7.1  
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1...    25   7.1  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    25   7.1  
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    25   9.4  

>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = +3

Query: 111 IEGDQEEIVLQSLNILIDLVDYNKDMSVQLLPILLYKISHDISPSI 248
           I  D ++  L  +NIL  L+D     S Q+LP LLY I+   +PS+
Sbjct: 340 IASDSDDTCLLKINILSRLLDAQN--SSQILPELLYYINSHPNPSV 383


>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 254 ECLKALPLMAKSKENVPTIVSILNKLKVNKGVPISF 361
           +CLKALP    S   +PT+  +     V+  +P++F
Sbjct: 277 QCLKALPFYCPSSLILPTVCYVSLPPFVSSVLPLTF 312


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -3

Query: 484 ATSTSHFRSSGLPAPGSTNNS 422
           ATS+ +F S+  PAP ++NN+
Sbjct: 226 ATSSPNFLSTSTPAPPNSNNA 246


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +3

Query: 33  SDISSLDNAVKYXXLXQXLGXAMSQNIEGDQEEIVLQSLNILIDLVDYNKDMSVQLLPI 209
           S + S++ A+K          A  QN+  D+E+ V + + I+ DL D     + Q+L +
Sbjct: 116 SSLKSVNEALKQAQDQNLKQTAQLQNLLSDKEKEVEKKITIIKDLKDALASSTHQVLEL 174


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = +3

Query: 102 SQNIEGDQEEIVLQSLNILIDLVDYNKDMSVQ 197
           ++ +E + EEI+L  LNI+  ++  N ++ ++
Sbjct: 454 NREVEEENEEILLVLLNIISSVIGRNAELDLE 485


>SPBC19C2.02 |pmt1||DNA methyltransferase
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 330

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 423 PEGMESSGPGVSLRLVYRLIRNEIGTPLLTF 331
           PE +E S   V+ + +YRL+ N I   ++++
Sbjct: 289 PESLEWSKSNVTEKCMYRLLGNSINVKVVSY 319


>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 484

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 359 FLISLYTSLSETPGPLLSIPSGVVG*P 439
           F+  LY  L+  PG +  +P+ ++G P
Sbjct: 52  FVSELYKGLTTNPGDVPMVPTWIIGTP 78


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 429 TTPEGMESSGPGVSLRLVYRLIRNEIGTPLLTFSLFNIDTIVGTFS 292
           TTP     +G  VS RL   LI   +   LL ++ FN+    GTF+
Sbjct: 639 TTPLLRHITGYLVSRRLEPELISPRVFGFLLEYAAFNVVQTEGTFT 684


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 368 SLYTSLSETPGPLLSIPSGV 427
           ++Y +LSE PG L   PSG+
Sbjct: 10  NIYLNLSEKPGKLRIAPSGL 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,055,109
Number of Sequences: 5004
Number of extensions: 40032
Number of successful extensions: 96
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)