Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0812
         (534 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18884| Best HMM Match : GPW_gp25 (HMM E-Value=0.84)                 38   0.007
SB_23825| Best HMM Match : C4dic_mal_tran (HMM E-Value=4.9)            31   0.78 
SB_56338| Best HMM Match : DUF970 (HMM E-Value=1.9)                    29   3.2  
SB_56012| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_16008| Best HMM Match : Orn_Arg_deC_N (HMM E-Value=6.6e-09)         27   7.3  
SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_54895| Best HMM Match : S1 (HMM E-Value=4.3)                        27   9.6  
SB_15491| Best HMM Match : zf-C3HC4 (HMM E-Value=0.079)                27   9.6  

>SB_18884| Best HMM Match : GPW_gp25 (HMM E-Value=0.84)
          Length = 486

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +3

Query: 120 DQEEIVLQS-LNILIDLVDYNKDMSVQLLPILLYKISHDISPSIKMSV 260
           D   +VLQ  L+++ DLV      S  LLP+LLYK+  + +P +K+ +
Sbjct: 428 DTPAVVLQEVLSVMGDLVQSVPSQSPNLLPLLLYKLGKEANPDLKLQI 475


>SB_23825| Best HMM Match : C4dic_mal_tran (HMM E-Value=4.9)
          Length = 646

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 201 KVVQTYPCYNQPDQLKYLMIATRSPPDPPRCFATWQXR 88
           K +QT P + +  + K L  AT   P    CF TW+ R
Sbjct: 97  KYIQTRPLHERLTERKRLRSATAHDPRSLSCFTTWRLR 134


>SB_56338| Best HMM Match : DUF970 (HMM E-Value=1.9)
          Length = 554

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = -1

Query: 459 RLASPRRGQPTTPEGMESSGPGVSLRLV 376
           R+ASPRR    T   M   G G  LRLV
Sbjct: 440 RVASPRRSSRGTSRDMPDEGVGAELRLV 467


>SB_56012| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 354

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +2

Query: 251 NECLKALPLMAKSKENVPTIVSILNKLKVNKGVPISFLISLYTSLS 388
           + CL+ L  + K   + P   S   +L V  G+P+SF + + + +S
Sbjct: 118 SSCLQTLMFICKKPSSFPPPYSRSTELAVMVGIPLSFAVIVISVVS 163


>SB_16008| Best HMM Match : Orn_Arg_deC_N (HMM E-Value=6.6e-09)
          Length = 314

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = +2

Query: 317 ILNKLKVNKGVPI-SFLIS--LYTSLSETPGPLLSIP 418
           + NKL+ NKG+PI S  IS  +   L    GP++S P
Sbjct: 8   VFNKLEFNKGIPIVSHAISQGISFGLQNPGGPVISDP 44


>SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1803

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 9/30 (30%), Positives = 21/30 (70%)
 Frame = +3

Query: 153 ILIDLVDYNKDMSVQLLPILLYKISHDISP 242
           +L D++++++    +L P+LL ++ HD+ P
Sbjct: 863 LLADVLEWHQPPKRRLPPLLLARLQHDLGP 892


>SB_54895| Best HMM Match : S1 (HMM E-Value=4.3)
          Length = 479

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -1

Query: 477 RLPTSDRLASPRRGQPTTPEGMESSGPGVSLRLVYRLIRNEIGTP 343
           R+    R    R+  PT  EG  S+ P VSL +++ + R  +  P
Sbjct: 154 RIQQQARSQGVRKNHPTRLEGQSSTEPAVSLVILHSVNREILYDP 198


>SB_15491| Best HMM Match : zf-C3HC4 (HMM E-Value=0.079)
          Length = 689

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -1

Query: 450 SPRRGQPTTPEGMESSGPGVS-LRLVYRLI-RNEIGTPLLTFS 328
           SP +GQP T  G  +  P  + LRL+  +  R E+  P + FS
Sbjct: 641 SPPQGQPATTTGNPTPSPNHNDLRLIIHVEGRRELEVPAIDFS 683


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,772,556
Number of Sequences: 59808
Number of extensions: 312190
Number of successful extensions: 687
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)