Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0812
         (534 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          28   0.069
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   3.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   7.9  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 27.9 bits (59), Expect = 0.069
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -2

Query: 350 AHLY*PSACS--ISTLLLAHFPCS*PLAVKPSDTHFDRRRYIVRY 222
           AH    SACS     LLL++ PC  P  + P D  F+  ++I+ +
Sbjct: 49  AHKVVLSACSSYFQKLLLSN-PCKHPTIIMPQDVCFNDLKFIIEF 92


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +3

Query: 102 SQNIEGDQEEIVLQSLNILIDLVDYNKDMSVQLLPILLY 218
           S    GDQ  + L +    +DL DY K  +  ++ +  Y
Sbjct: 171 SWTFNGDQVSLALYNNKNFVDLSDYWKSGTWDIINVPAY 209


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
          methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 64 LTALSRELISDTQHFNL 14
          LTALSRE+IS     N+
Sbjct: 29 LTALSREVISRQATINI 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,430
Number of Sequences: 438
Number of extensions: 2928
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)