Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0812
         (534 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67220.1 68418.m08473 nitrogen regulation family protein simi...    31   0.64 
At5g47690.1 68418.m05887 expressed protein                             29   1.9  
At4g11230.1 68417.m01819 respiratory burst oxidase, putative / N...    28   4.5  
At2g46200.2 68415.m05745 expressed protein low similarity to ES1...    27   7.9  
At2g46200.1 68415.m05744 expressed protein low similarity to ES1...    27   7.9  

>At5g67220.1 68418.m08473 nitrogen regulation family protein similar
           to unknown protein (gb|AAF51525.1) ; contains Pfam
           domain PF01207: Dihydrouridine synthase (Dus); similar
           to (SP:P45672) NIFR3-like protein (SP:P45672)
           [Azospirillum brasilense]
          Length = 423

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 293 ENVPTIVSILNKLKVNKGVPISFLISLYTSLSET 394
           +N+P + S++ KL  N  VP+S  I ++ +L +T
Sbjct: 193 DNLPLVKSLVEKLAQNLNVPVSCKIRIFPNLEDT 226


>At5g47690.1 68418.m05887 expressed protein
          Length = 1638

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +3

Query: 120 DQEEIVLQSL-NILIDLVDYNKDMSVQLLPILLYKISHDIS 239
           D  EIV  S+ NI+I L++ ++D+   LL ILL K+  + S
Sbjct: 162 DHPEIVFSSMQNIMIVLLEESEDVQEHLLLILLSKLGRNRS 202


>At4g11230.1 68417.m01819 respiratory burst oxidase, putative /
           NADPH oxidase, putative similar to respiratory burst
           oxidase homolog F [gi:3242456], RbohAp108 [gi:2654868]
           from Arabidopsis thaliana, respiratory burst oxidase
           homolog [GI:16549087] from Solanum tuberosum; contains
           Pfam profile PF01794 Ferric reductase like transmembrane
           component
          Length = 941

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -2

Query: 332 SACSISTLLL---AHFPCS*PLAVKPSDTHFDRRRYIVRYF 219
           S   IS +LL   +H  C  P  +  +DT  D +RY+V+YF
Sbjct: 460 SVAIISAMLLHATSHLACDFPRILASTDT--DYKRYLVKYF 498


>At2g46200.2 68415.m05745 expressed protein low similarity to ES18
           [Mus musculus] GI:4416181
          Length = 382

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 129 PPDPPRCFATWQXRXI 82
           PPDPPRC   W  + I
Sbjct: 20  PPDPPRCGMFWNTKNI 35


>At2g46200.1 68415.m05744 expressed protein low similarity to ES18
           [Mus musculus] GI:4416181
          Length = 382

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 129 PPDPPRCFATWQXRXI 82
           PPDPPRC   W  + I
Sbjct: 20  PPDPPRCGMFWNTKNI 35


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,792,780
Number of Sequences: 28952
Number of extensions: 211277
Number of successful extensions: 522
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)