Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0811
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator Dap1|Sch...    72   8e-14
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ...    29   0.97 
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    28   1.3  
SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family ...    28   1.7  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    28   1.7  
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz...    27   3.9  
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc...    26   5.2  
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    26   5.2  
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    25   9.0  
SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    25   9.0  
SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|c...    25   9.0  

>SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator
           Dap1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 166

 Score = 72.1 bits (169), Expect = 8e-14
 Identities = 39/90 (43%), Positives = 56/90 (62%), Gaps = 6/90 (6%)
 Frame = +1

Query: 262 KLPKLRKDMTAVELRQYDGTQEGGRVLMAVNGWIFDVTRGNRFYGPGGPYAVFGGRDATR 441
           K P+ R D T  EL++Y+G++    V +A+ G +++VT G++FYGP GPY+ F G DA+R
Sbjct: 36  KQPEWR-DYTPAELKEYNGSKNS-LVFLAIKGTVYNVTMGSKFYGPQGPYSAFAGHDASR 93

Query: 442 GLATFSVT---APEKD---YDDLSDLNSRK 513
           GLA  S      P+ D    DD SDLN  +
Sbjct: 94  GLAKNSFDDEFIPDSDAEELDDCSDLNDEE 123



 Score = 29.9 bits (64), Expect = 0.42
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 510 EMESVREWEEQFRENYDLVGRLLRPGEEPRNYSDEEPEE 626
           E +++ +W+  F + Y  VGRL+ P E     +  E EE
Sbjct: 123 ERQALNDWKAFFDQKYQAVGRLISPREARAAATISETEE 161


>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 454

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +3

Query: 519 SVREWEEQFRENYDLVGRLLRPGEEPRNYSDEEPEEADTSAL-PNDDKKTNLNFHCQMTV 695
           S  +W     E +D    L +  ++       E ++ D + L  + +K  N N+H +  V
Sbjct: 87  SKNKWSMDCDEEFDFAANLEKFDKKQVFAEFREKDKKDPAKLLVSHNKSPNRNYHHKQNV 146

Query: 696 ALPSKIDQFVE 728
             PS  D+FV+
Sbjct: 147 LGPSVKDEFVD 157


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -3

Query: 264 FFQGATFEQCVLYL**NLYSITNV 193
           FF+ AT +QC+L    +L+S+TN+
Sbjct: 16  FFRNATLDQCLLLFYLSLFSLTNL 39


>SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 639 RTCLLLRVLRPSSSWVLHQASEV 571
           R  LLL  L+PS+SWVL   S++
Sbjct: 168 RNTLLLSTLKPSTSWVLWLDSDI 190


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +3

Query: 552 NYDLVGRLLRPGEEPRNYSDEEPEEADTSALPNDDKKTNLNFHCQMTVALP 704
           NYD    ++ P   P+NY D    + +TS+  + D    LN      V  P
Sbjct: 75  NYDQQPDIIHPSSTPKNYHDLNCTKGETSSDDSTDDIAFLNEKMGTLVTTP 125


>SPBC1A4.06c |||mitochondrial matrix protein import
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +2

Query: 89  DSPPEVENVQAKHSGFFET--LKTLFCQPFIYFV 184
           ++P +VEN+ +K   FF    L  L+ +P ++F+
Sbjct: 242 ENPRKVENIVSKQIAFFRKLYLPLLYAEPGVHFI 275


>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 687 MTVALPSKIDQFVEHFASHLHSLIGY 764
           + VA PS+I+   EH   H+ SL G+
Sbjct: 541 LQVATPSQINLMAEHLKKHMVSLRGH 566


>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 401 PGP*NRFPLVTSNIHPFTAINTLPPSCVPSYCRS 300
           P P    P+  +  H  T +NT P S V + CRS
Sbjct: 198 PSPIILKPVEQAVNHAITLVNTSPSSVVDALCRS 231


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 549 ENYDLVGRLLRPGEEPR 599
           ENY   GR+++ GE+PR
Sbjct: 505 ENYHKEGRVIKEGEQPR 521


>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
 Frame = -1

Query: 323 CVPSYCRSSTAVISFRNLGSFFKE------QPLNNVSYTCSKIYTVS 201
           CV ++  SS  + S  NL ++F+E      + LNN+S++C+ ++  S
Sbjct: 422 CVVAFEFSSEEIPS--NLSNYFQEVGDRTIECLNNISWSCNSVFVES 466


>SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
 Frame = -1

Query: 344 INTLPPSCVPSYCRSSTAVISFRNLGSFFKE------QPLNNVSYTCSKIYTVSQMYSQK 183
           +  LPP   P +  SS+  ISF N G  F++      +P  + +   S    V+Q Y  K
Sbjct: 177 VTELPPKRPPYHYESSSTSISFVNGGPNFRKVKSGLLKPDADAASNLSTTSLVNQEYVMK 236

Query: 182 Q 180
           Q
Sbjct: 237 Q 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,281,289
Number of Sequences: 5004
Number of extensions: 70922
Number of successful extensions: 262
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)