Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0811
         (767 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41552-5|AAP82646.1|  183|Caenorhabditis elegans Vema (mammalian...    74   1e-13
U41552-4|AAD31555.1|  198|Caenorhabditis elegans Vema (mammalian...    74   1e-13
AL024499-6|CAA19709.1|  326|Caenorhabditis elegans Hypothetical ...    49   4e-06
U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical pr...    33   0.30 
AF016451-8|AAB66004.2|  354|Caenorhabditis elegans Serpentine re...    31   0.90 
AF016451-7|AAB66003.2|  312|Caenorhabditis elegans Serpentine re...    31   0.90 
AF100664-2|AAC68984.1|  665|Caenorhabditis elegans Hypothetical ...    30   2.1  
Z75547-14|CAA99901.2|  461|Caenorhabditis elegans Hypothetical p...    28   8.4  
AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical ...    28   8.4  

>U41552-5|AAP82646.1|  183|Caenorhabditis elegans Vema (mammalian
           ventral midlineantigen) related protein 1, isoform b
           protein.
          Length = 183

 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 35/80 (43%), Positives = 46/80 (57%)
 Frame = +1

Query: 268 PKLRKDMTAVELRQYDGTQEGGRVLMAVNGWIFDVTRGNRFYGPGGPYAVFGGRDATRGL 447
           P    DMT  ELR+YDG +    +L  +NG I+DVTRG  FYGPG  Y    G DATR L
Sbjct: 44  PLPMSDMTVEELRKYDGVKNE-HILFGLNGTIYDVTRGKGFYGPGKAYGTLAGHDATRAL 102

Query: 448 ATFSVTAPEKDYDDLSDLNS 507
            T    A   ++DD + +++
Sbjct: 103 GTMDQNAVSSEWDDHTGISA 122



 Score = 34.7 bits (76), Expect = 0.073
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 510 EMESVREWEEQFRENYDLVGRLLRPGEEPRNYSDEE 617
           E E+  EWE QF+  Y  VGRL++   E  +Y + +
Sbjct: 124 EQETANEWETQFKFKYLTVGRLVKNSSEKADYGNRK 159


>U41552-4|AAD31555.1|  198|Caenorhabditis elegans Vema (mammalian
           ventral midlineantigen) related protein 1, isoform a
           protein.
          Length = 198

 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 35/80 (43%), Positives = 46/80 (57%)
 Frame = +1

Query: 268 PKLRKDMTAVELRQYDGTQEGGRVLMAVNGWIFDVTRGNRFYGPGGPYAVFGGRDATRGL 447
           P    DMT  ELR+YDG +    +L  +NG I+DVTRG  FYGPG  Y    G DATR L
Sbjct: 59  PLPMSDMTVEELRKYDGVKNE-HILFGLNGTIYDVTRGKGFYGPGKAYGTLAGHDATRAL 117

Query: 448 ATFSVTAPEKDYDDLSDLNS 507
            T    A   ++DD + +++
Sbjct: 118 GTMDQNAVSSEWDDHTGISA 137



 Score = 34.7 bits (76), Expect = 0.073
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 510 EMESVREWEEQFRENYDLVGRLLRPGEEPRNYSDEE 617
           E E+  EWE QF+  Y  VGRL++   E  +Y + +
Sbjct: 139 EQETANEWETQFKFKYLTVGRLVKNSSEKADYGNRK 174


>AL024499-6|CAA19709.1|  326|Caenorhabditis elegans Hypothetical
           protein H38K22.3 protein.
          Length = 326

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 21/55 (38%), Positives = 32/55 (58%)
 Frame = +1

Query: 289 TAVELRQYDGTQEGGRVLMAVNGWIFDVTRGNRFYGPGGPYAVFGGRDATRGLAT 453
           T  +L  +DGT++   + +A+ G +++V     +YGPG  Y  F GRDATR   T
Sbjct: 102 TPEQLHFFDGTRDSKPIYLAILGRVYNVDGKKEYYGPGKSYHHFAGRDATRAFTT 156


>U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical
           protein T26A5.5a protein.
          Length = 1076

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +3

Query: 516 ESVREWEEQFRENYDLVGRLLRPGEEPRNYSDEEPEEAD 632
           E +  +EE+F E Y+ +G+  R  +E   Y  EEPE+ +
Sbjct: 589 EDINGFEEEFEEEYEGIGQ--RDDQEEEEYDAEEPEDQE 625


>AF016451-8|AAB66004.2|  354|Caenorhabditis elegans Serpentine
           receptor, class t protein65 protein.
          Length = 354

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 110 NVQAKHSGFFETLKTLFCQPFIYFVFVSTFVILYKFYYKYK 232
           +++ K +G F  L+ + C P +   F S  +I+Y  Y K K
Sbjct: 208 DMEVKFAGLFAELELVLCFPTLALSFCSYILIIYSIYKKRK 248


>AF016451-7|AAB66003.2|  312|Caenorhabditis elegans Serpentine
           receptor, class t protein64 protein.
          Length = 312

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = +2

Query: 83  KMDSPPEVENVQAKHSGFFETLKTLFCQPFIYFVFVSTFVILYKFYYK 226
           ++  P    +++ K++  F +L+ + C P +   F+S  +I+Y  Y K
Sbjct: 157 ELTGPNWAYDMKVKYADLFASLELVLCFPTLALSFISYILIIYSIYKK 204


>AF100664-2|AAC68984.1|  665|Caenorhabditis elegans Hypothetical
           protein M57.1 protein.
          Length = 665

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +3

Query: 510 EMESVREWEEQFRENYDLVGRLLRPGEEPRNYSDEEPEEADTSALPNDDKKTNLN 674
           E   V +W+ +    Y++  +  + GE+  + + E  E A     PN+D+ T LN
Sbjct: 400 ETSLVAKWKRKSDSYYEMYQKRRKIGEKELSDTAEVEEVAPYDEAPNEDQDTQLN 454


>Z75547-14|CAA99901.2|  461|Caenorhabditis elegans Hypothetical
           protein R11D1.7 protein.
          Length = 461

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 101 EVENVQAKHSGFFETLKTLFCQPFIYFVFVSTFVILYKFYY 223
           EV  V    +  F   K   C P + FVF  TF+++Y  ++
Sbjct: 14  EVFTVLGALAASFLVEKRFLCAPRMIFVFQQTFMLIYIIFF 54


>AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical
           protein M01E10.2 protein.
          Length = 1286

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = -1

Query: 446 SPLVASLPPKTAYGPPGP*NRF--PLVTSNIHPFT-AINTLPPSCV 318
           S +V +LP K +  P    + F  PLVTS+ +PFT  ++T P S V
Sbjct: 502 STVVHNLPTKPSSAPTLHPSTFSPPLVTSSENPFTFTLDTTPTSTV 547


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,398,166
Number of Sequences: 27780
Number of extensions: 411403
Number of successful extensions: 1375
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1367
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)