Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0809
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.03 |gna1|spgna1|glucosamine-phosphate N-acetyltransfera...    26   5.0  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    26   6.6  
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha...    26   6.6  

>SPAC16E8.03 |gna1|spgna1|glucosamine-phosphate
           N-acetyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 111

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 328 LVHPSKQ*KRIKKIYILTDAEHAADASTQEVSPRCSEYAAG 450
           +VHP  Q K I K+ +LT  + A   ++ +V   CS+   G
Sbjct: 48  IVHPDHQRKAIGKLMVLTLIKLAFSLNSYKVILDCSDSNVG 88


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1316

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 148  IVVDSFWIGFCISTINIRKAEPDLH 74
            I ++ FW+ F  +T NI  +  D+H
Sbjct: 1107 IHIEDFWLPFYANTTNITHSRMDIH 1131


>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
           Caf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = -2

Query: 168 MEPADFI*LLIASGLV 121
           +EPADF  LLI SGLV
Sbjct: 141 IEPADFAELLIGSGLV 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,998,706
Number of Sequences: 5004
Number of extensions: 62562
Number of successful extensions: 169
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)