Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0809
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40488| Best HMM Match : HEAT (HMM E-Value=6.3e-08)                  29   3.0  
SB_52511| Best HMM Match : RVT_1 (HMM E-Value=0.00044)                 29   5.3  
SB_21191| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_49780| Best HMM Match : 7tm_1 (HMM E-Value=0.12)                    28   9.2  

>SB_40488| Best HMM Match : HEAT (HMM E-Value=6.3e-08)
          Length = 1185

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 23/64 (35%), Positives = 31/64 (48%)
 Frame = -3

Query: 332  TSSQPTCILFSSVLDELASKYMLLIPPQLIFNSVTYLCR*FLLHDLCMYVLYVRAWNQQI 153
            T    TC LF  +L     +Y+LLI   L++  ++  C  FLL   CM    VRA    +
Sbjct: 867  TGISSTCSLF--LLCFRHQQYVLLI--SLVYTGISSTCFFFLL---CMQASAVRAVGVLV 919

Query: 152  LYSC 141
            LY C
Sbjct: 920  LYPC 923


>SB_52511| Best HMM Match : RVT_1 (HMM E-Value=0.00044)
          Length = 513

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 244 INCGGIRSIYFEANSSSTEENKIQV-GCELVHPSKQ*KRIKKIYI 375
           I+ GG   I  + + +  EE +  V GCE++  S Q  R KK+YI
Sbjct: 119 ISSGGGVFIAVQNDLTVVEEPRFDVKGCEIITASLQFSRTKKLYI 163


>SB_21191| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 541

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 358 IKKIYILTDAEHAADASTQEVSPRCSEYAAGGGDR 462
           + ++Y   D+  AAD    EV+ +  ++A G GDR
Sbjct: 505 VVRVYAEADSRDAADKLAVEVAQKVFDFAGGVGDR 539


>SB_49780| Best HMM Match : 7tm_1 (HMM E-Value=0.12)
          Length = 345

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -1

Query: 214 DFFFMIYVCMCYMFEHGTSRFYIVVDSFWI-GFCISTINIRKAE 86
           D +FM+Y  + Y     T+R  + + SFWI  F + T+     E
Sbjct: 45  DRYFMLYFHLQYRTMVTTTRISVAIVSFWILSFTVVTVGYYNQE 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,710,979
Number of Sequences: 59808
Number of extensions: 422690
Number of successful extensions: 1078
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)