Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0809
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    24   1.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   1.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.7  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   4.0  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          22   7.0  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   7.0  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   7.0  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -1

Query: 229 LICVGDFFFMIYV-CMCYMFEHGTSRFYIVVDSFWIGFCISTIN 101
           ++C   FF M  V   C    H T  F ++   FW+G+C S IN
Sbjct: 19  ILCWLPFFTMYLVRAFCRNCIHPTV-FSVL---FWLGYCNSAIN 58


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -1

Query: 229 LICVGDFFFMIYV-CMCYMFEHGTSRFYIVVDSFWIGFCISTIN 101
           ++C   FF M  V   C    H T  F ++   FW+G+C S IN
Sbjct: 467 ILCWLPFFTMYLVRAFCRNCIHPTV-FSVL---FWLGYCNSAIN 506


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = -1

Query: 154 FYIVVDSFWIGFCISTINIRKAEPDLHILA 65
           F +++D+F I   +  +N+    P  H++A
Sbjct: 309 FTMILDTFSICVTVVVLNVHFRSPQTHVMA 338


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -3

Query: 311 ILFSSVLDELASKYMLLIPPQLIFNSVTYL 222
           +L S   D     Y  L+PP    NSV Y+
Sbjct: 188 VLLSVWWDYKGIVYFELLPPNRTINSVVYI 217


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 272 YMLLIPPQLIFNSVTYL 222
           Y  L+PP    NSV Y+
Sbjct: 80  YFELLPPNRTINSVVYI 96


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 227 YLCR*FLLHDLCMYVLYVRAWNQQILY 147
           Y+ R FL+       L +  WN QIL+
Sbjct: 76  YIIRMFLISQQKTSKLKIYKWNNQILH 102


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 227 YLCR*FLLHDLCMYVLYVRAWNQQILY 147
           Y+ R FL+       L +  WN QIL+
Sbjct: 59  YIIRMFLISQQKTSKLKIYKWNNQILH 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,410
Number of Sequences: 438
Number of extensions: 4851
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)