Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0808
         (756 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   2.6  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   2.6  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    23   2.6  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    22   4.6  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/34 (23%), Positives = 17/34 (50%)
 Frame = -3

Query: 229  LICVGDFFFMIYVCMCYMFEHGTSRFYIVVDSFW 128
            +IC  D F++ +VC   + E     ++  +  F+
Sbjct: 1003 IICAADVFYICHVCYATIQEVRAKIYFFYLVKFY 1036


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 393 VLSICQYIYFFYSFLLLRWVDELTAHLYLI 304
           +L  C +I+F    L L  +D  T HL  +
Sbjct: 180 LLFCCAFIFFNMHLLFLLCLDYFTLHLLFL 209


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/34 (23%), Positives = 17/34 (50%)
 Frame = -3

Query: 229 LICVGDFFFMIYVCMCYMFEHGTSRFYIVVDSFW 128
           +IC  D F++ +VC   + E     ++  +  F+
Sbjct: 284 IICAADVFYICHVCYATIQEVRAKIYFFYLVKFY 317


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 680 PLVSPHG*VPPPY 718
           P V PH  VPPP+
Sbjct: 12  PTVLPHQEVPPPF 24


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,623
Number of Sequences: 336
Number of extensions: 4049
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20234955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)