Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0808
(756 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0714 - 6312718-6313095 31 0.99
12_01_0171 - 1268803-1269500,1271491-1271567,1271941-1272065,127... 29 4.0
11_01_0169 - 1365984-1366681,1368669-1368745,1369133-1369257,136... 29 4.0
01_01_0501 - 3682100-3682148,3682263-3682341,3682434-3682511,368... 29 4.0
11_04_0426 - 17573681-17574010,17574163-17574282,17574382-175747... 29 5.3
11_01_0410 - 3111899-3112513,3112907-3112962,3113884-3114355 29 5.3
05_03_0111 - 8512892-8512955,8513189-8513805 29 5.3
09_04_0170 + 15310240-15310397,15310523-15310605,15310689-153106... 28 7.0
08_02_0823 + 21557111-21557292,21557391-21557473,21557722-215578... 28 7.0
01_05_0407 - 21883009-21883950 28 7.0
>08_01_0714 - 6312718-6313095
Length = 125
Score = 31.1 bits (67), Expect = 0.99
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 470 REEVSALGSARRRSAPHA-RGIGKTEGQSSTLLGQSASQGMK*KGKVLEKKY 622
R +ALG RRR AP A R +G G LG S S G + +V + ++
Sbjct: 29 RAPEAALGEGRRRRAPTAGRYVGDRVGLQPAALGSSGSNGKGRRRRVQQARW 80
>12_01_0171 -
1268803-1269500,1271491-1271567,1271941-1272065,
1272146-1272234,1272851-1272936,1273509-1273765
Length = 443
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2
Query: 446 RAAETGMSREEVSALGSARRRSAPHARGIGKTEG 547
R+ G+SREE L S RRRS+ +RG+ K G
Sbjct: 152 RSEMEGVSREEY--LASLRRRSSGFSRGVSKYRG 183
>11_01_0169 -
1365984-1366681,1368669-1368745,1369133-1369257,
1369338-1369426,1370041-1370126,1370705-1370970
Length = 446
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2
Query: 446 RAAETGMSREEVSALGSARRRSAPHARGIGKTEG 547
R+ G+SREE L S RRRS+ +RG+ K G
Sbjct: 155 RSEMEGVSREEY--LASLRRRSSGFSRGVSKYRG 186
>01_01_0501 -
3682100-3682148,3682263-3682341,3682434-3682511,
3682770-3682866,3682944-3683029,3683310-3683381,
3683451-3683520,3683988-3684110,3684212-3684370,
3684443-3684730,3685652-3685725,3686107-3686344
Length = 470
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = -3
Query: 229 LICVGDFFFMIYVCMCYMFEHGTSRFYIVVDSFWIGFCISTINI 98
L+C+ F +++ +C C + T YI + +F+IG C+S I+I
Sbjct: 179 LLCMSTFTYLMCICAC---KRATKEGYI-LGAFFIG-CLSAISI 217
>11_04_0426 -
17573681-17574010,17574163-17574282,17574382-17574754,
17575051-17575087,17575821-17575872
Length = 303
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/66 (28%), Positives = 34/66 (51%)
Frame = -1
Query: 462 PVSAARGILATSGRDFLR*SVCGVLSICQYIYFFYSFLLLRWVDELTAHLYLIFFSAG*I 283
P+S R ++ T +F+ S+ L+I ++F Y L+ D+ A ++ FS G I
Sbjct: 150 PLSIIRLVVRTKSVEFMPFSLSFSLTISAVVWFLYGLLI---KDKYVALPNVLGFSFGVI 206
Query: 282 SLKIYA 265
+ +YA
Sbjct: 207 QMGLYA 212
>11_01_0410 - 3111899-3112513,3112907-3112962,3113884-3114355
Length = 380
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = +2
Query: 407 QRKKSLPDVASMPRAAETGMSREEVSALGSARRRSAPHARGIGKTEGQSSTLLGQSASQG 586
+R++ VA P+AA G +E +A+ RRR A A + + LG A
Sbjct: 89 RRQQGEEGVAVSPKAAAAGGGKETTAAMRVRRRREASSAAARDASSSAAGGELGSDARCE 148
Query: 587 MK*KGK 604
+ GK
Sbjct: 149 LSSGGK 154
>05_03_0111 - 8512892-8512955,8513189-8513805
Length = 226
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -2
Query: 347 CFDGWTSSQPTC-ILFSSVLDELAS 276
C D W SS TC I + V+DELA+
Sbjct: 176 CIDAWLSSHSTCPICRADVVDELAA 200
>09_04_0170 +
15310240-15310397,15310523-15310605,15310689-15310697,
15310852-15310940,15311514-15311587,15311731-15311781,
15311887-15311963,15313865-15314463
Length = 379
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 461 GMSREEVSALGSARRRSAPHARGIGKTEG 547
G SREE +GS RR+S+ +RG+ K G
Sbjct: 126 GQSREEY--IGSLRRKSSGFSRGVSKYRG 152
>08_02_0823 +
21557111-21557292,21557391-21557473,21557722-21557810,
21557985-21558058,21558264-21558314,21558406-21558482,
21560206-21560900
Length = 416
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 461 GMSREEVSALGSARRRSAPHARGIGKTEG 547
G SREE +GS RR+S+ +RG+ K G
Sbjct: 131 GQSREEY--IGSLRRKSSGFSRGVSKYRG 157
>01_05_0407 - 21883009-21883950
Length = 313
Score = 28.3 bits (60), Expect = 7.0
Identities = 21/56 (37%), Positives = 26/56 (46%)
Frame = +2
Query: 413 KKSLPDVASMPRAAETGMSREEVSALGSARRRSAPHARGIGKTEGQSSTLLGQSAS 580
+K LP +S +AA R E A S RRRSAP G G SS +A+
Sbjct: 54 RKPLPSSSSSSKAA-----RRERGASSSTRRRSAPGDEGSSGGVGGSSAKAAATAA 104
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,451,371
Number of Sequences: 37544
Number of extensions: 389153
Number of successful extensions: 1108
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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