Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0808
         (756 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03000.1 68415.m00252 zinc finger (C3HC4-type RING finger) fa...    31   0.83 
At1g27290.1 68414.m03325 expressed protein                             29   2.5  
At1g15660.1 68414.m01880 expressed protein similar to CENPCA pro...    29   3.3  
At5g22740.1 68418.m02656 glycosyl transferase family 2 protein s...    29   4.4  
At4g01570.1 68417.m00203 pentatricopeptide (PPR) repeat-containi...    29   4.4  
At5g09470.1 68418.m01096 mitochondrial substrate carrier family ...    28   7.7  

>At2g03000.1 68415.m00252 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 535

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
 Frame = +2

Query: 290 PALKKIRYRWAVSSSTHRSNKKE*KKYIY*QMLSTPQTLQRKKSLPDVASM--PRAAETG 463
           P +     R  ++SS   +N      YI    L    T    +S P V S   PR  +T 
Sbjct: 148 PEIMPTSSRNVITSSEEVANTFTQTSYIQFGSLWETNTTPSTRSWPTVPSSNSPRVLQTS 207

Query: 464 MSREEVSALGSARRRSAPHARGIGKTEGQSST 559
           MSR   S + S+ RR+   +   G+    SST
Sbjct: 208 MSRRGTSPMSSSTRRNVQSSMS-GRETVSSST 238


>At1g27290.1 68414.m03325 expressed protein
          Length = 142

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -1

Query: 438 LATSGRDFLR*SVCGVLSICQYIYFFYSFLLLRWVDELTAHLYLIFFSAG*IS 280
           ++ SG   L   +   L +C  + FF  FLL+ WV      L L+F+ AG +S
Sbjct: 64  ISPSGFASLLLGISVALMLCGSVTFFIGFLLMPWV----LALILVFYVAGIVS 112


>At1g15660.1 68414.m01880 expressed protein similar to CENPCA
           protein (GI:11863170) {Zea mays}
          Length = 705

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 23/87 (26%), Positives = 35/87 (40%)
 Frame = +2

Query: 92  LSYVDGTNTKTNPEAINNYIKSAGSMLEHITHTYINHEEEITYTNKLRN*KSIVVGSGAY 271
           + Y  G ++K+   A   Y    GS LEH  H    HEEE   T        + V +   
Sbjct: 489 IPYQQGASSKSPNRAPEQYNTMGGS-LEHAEHNQGLHEEENVNTGSA---SGLQVENAPE 544

Query: 272 ILRLIHPALKKIRYRWAVSSSTHRSNK 352
           + +  H    K R R +  S+  + +K
Sbjct: 545 VHKYSHKQTNKRRKRGSSDSNVKKRSK 571


>At5g22740.1 68418.m02656 glycosyl transferase family 2 protein
           similar to beta-(1-3)-glucosyl transferase GB:AAC62210
           GI:3687658 from [Bradyrhizobium japonicum], cellulose
           synthase from Agrobacterium tumeficiens [gi:710492] and
           Agrobacterium radiobacter [gi:710493]; contains Pfam
           glycosyl transferase, group 2 family protein domain
           PF00535
          Length = 534

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 211 FFFMIYVCMCYMFEHGTSRFYIVVDSFWIGFCIS 110
           F   ++VC CY F HG + ++I +    + F IS
Sbjct: 490 FAAFLFVCGCYDFVHGKNNYFIYLFLQTMSFFIS 523


>At4g01570.1 68417.m00203 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 805

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +2

Query: 413 KKSLPDVASMPRAAETGMSREEVSALGSARRRSAPHARGIGKTEGQSSTLLGQSASQGMK 592
           K S  D+ SM  + + G S EEVS +      S+P+   +     Q   L G +  Q ++
Sbjct: 527 KGSFLDIMSMVGSEDDGASAEEVSPMEDDPWSSSPYMDQLAHQRNQPKPLFGLARGQRVE 586

Query: 593 *K 598
            K
Sbjct: 587 AK 588


>At5g09470.1 68418.m01096 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 337

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
 Frame = -1

Query: 492 PSADTSSRDIPVSAARGILATSGRDFLR*SVCGVLSICQYIYF-----FYSFLLLRWVDE 328
           PS+ T S   P +    I+ T G   L   V   + + Q +Y       Y FL  RW D+
Sbjct: 82  PSSSTRSVMTPFAVGAHIVKTEGPAALFSGVSATI-LRQMLYSATRMGIYDFLKRRWTDQ 140

Query: 327 LTAHLYLI 304
           LT +  L+
Sbjct: 141 LTGNFPLV 148


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,504,423
Number of Sequences: 28952
Number of extensions: 315310
Number of successful extensions: 781
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)