Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0807
         (574 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   1.4  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    22   4.3  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   5.6  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   9.9  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   9.9  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   9.9  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    21   9.9  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 317 CFCRFAVSVLIFYTLGGNTQGREWNTWSAAIIYPL 213
           C+C +++S+    TLG       W  WS   IY L
Sbjct: 554 CYCYYSISIRPISTLG-------WFFWSLLRIYEL 581


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 531 FSQRALRAAXTSCPKHQPTP 472
           F+     AA TS P H P P
Sbjct: 146 FAASIFHAAATSLPLHYPPP 165


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 483 DASDKMXKQLSKLAGRRERTPNMMI 557
           +ASDK  +   ++   RE+ P++ I
Sbjct: 568 EASDKDPEMYDRVVALREKNPDLKI 592


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = -3

Query: 476 HHFXPFIHQHHG 441
           +++ P +H HHG
Sbjct: 83  NYYHPQLHSHHG 94


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = -3

Query: 476 HHFXPFIHQHHG 441
           +++ P +H HHG
Sbjct: 83  NYYHPQLHSHHG 94


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = -3

Query: 476 HHFXPFIHQHHG 441
           +++ P +H HHG
Sbjct: 83  NYYHPQLHSHHG 94


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = -3

Query: 476 HHFXPFIHQHHG 441
           +++ P +H HHG
Sbjct: 83  NYYHPQLHSHHG 94


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,321
Number of Sequences: 336
Number of extensions: 2662
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14203976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)