Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0807
(574 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy... 42 5e-05
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer... 36 0.004
SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|... 35 0.007
SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr 3... 32 0.069
SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr ... 31 0.091
SPBC1347.09 |||hexaprenyldihydroxybenzoate methyltransferase|Sch... 29 0.37
SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr ... 28 0.84
SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr ... 28 0.84
SPAC977.03 |||methyltransferase |Schizosaccharomyces pombe|chr 1... 28 0.84
SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr... 27 1.5
SPAC29B12.11c |||human WW domain binding protein-2 ortholog|Schi... 27 2.0
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 27 2.6
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 2.6
SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1 |Schizosaccharo... 25 6.0
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 25 7.9
>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 543
Score = 42.3 bits (95), Expect = 5e-05
Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 348 RTQNYKDFLIGLLKNNGCKTVLDAACGTGIDSMMLVNEG-XKVVSVDASDKMXKQLS 515
RT+ Y+DF+ KTVLD CGTGI SM G KV +VD SD + +S
Sbjct: 239 RTEGYRDFVYHNKHIFAGKTVLDVGCGTGILSMFCAKAGAKKVYAVDNSDIIQMAIS 295
>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 35.9 bits (79), Expect = 0.004
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +3
Query: 282 KDQYADGKAAKTWNKFIGDSNQRTQNYKDFLIGLLKNNGCKTVLDAACGTGIDSMMLVNE 461
KD Y D + ++ + + RT +Y+D ++ K VLD CGTGI SM
Sbjct: 16 KDYYFDSYSHWGIHEEMLKDDVRTLSYRDAIMQNPHLFRDKIVLDVGCGTGILSMFCARA 75
Query: 462 GXK-VVSVDASDKMXK 506
G K V VD S+ + K
Sbjct: 76 GAKHVYGVDMSEIIHK 91
>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
methyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 271
Score = 35.1 bits (77), Expect = 0.007
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Frame = +3
Query: 309 AKTWNKFIGDS---NQRTQNYKDFLIGLLKNNGC---KTVLDAACGTGIDSMMLVNEGXK 470
AKTW + G S + DF+ + + C K +LD CG GI S + G
Sbjct: 42 AKTWWDWDGGSRLLHLMNSTRLDFMTEVFRERNCFSGKKILDIGCGGGILSESMARLGAS 101
Query: 471 VVSVDAS 491
V +VDAS
Sbjct: 102 VTAVDAS 108
>SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 260
Score = 31.9 bits (69), Expect = 0.069
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 408 VLDAACGTGIDSMMLVNEGXKVVSVDASDKMXKQLSKL 521
+LD CG G+ + LV++ +VV +DAS M K +L
Sbjct: 37 LLDLGCGDGVLTNELVSQCRRVVGIDASPDMIKAAREL 74
>SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 268
Score = 31.5 bits (68), Expect = 0.091
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 381 LLKNNGCKTVLDAACGTGIDSMMLVNEGXKVVSVDASDKM 500
LL G +LD CG+GI + + ++G VV +D S M
Sbjct: 42 LLDAEGPSFILDIGCGSGISTQIGESQGHVVVGMDISPSM 81
>SPBC1347.09 |||hexaprenyldihydroxybenzoate
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 284
Score = 29.5 bits (63), Expect = 0.37
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 405 TVLDAACGTGIDSMMLVNEGXKVVSVDASDKM 500
++LD ACGTG+ S L ++V +D S M
Sbjct: 80 SILDFACGTGLISQHLFPYCKQIVGIDVSQDM 111
>SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 145
Score = 28.3 bits (60), Expect = 0.84
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 402 KTVLDAACGTGIDSMMLVNEGXKVVSVDASDK-MXKQLSKLAGRR 533
+ VLDA C ++ L + G KVV +D S++ + K + K + +
Sbjct: 11 ENVLDAGCEPNRNARYLASLGYKVVGIDISERAISKAIDKTSSEK 55
>SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 145
Score = 28.3 bits (60), Expect = 0.84
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 402 KTVLDAACGTGIDSMMLVNEGXKVVSVDASDK-MXKQLSKLAGRR 533
+ VLDA C ++ L + G KVV +D S++ + K + K + +
Sbjct: 11 ENVLDAGCEPNRNARYLASLGYKVVGIDISERAISKAIDKTSSEK 55
>SPAC977.03 |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 145
Score = 28.3 bits (60), Expect = 0.84
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 402 KTVLDAACGTGIDSMMLVNEGXKVVSVDASDK-MXKQLSKLAGRR 533
+ VLDA C ++ L + G KVV +D S++ + K + K + +
Sbjct: 11 ENVLDAGCEPNRNARYLASLGYKVVGIDISERAISKAIDKTSSEK 55
>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +3
Query: 405 TVLDAACGTGIDSMMLVNEGXKVVSVDASDKMXKQLSK 518
TVL+ GTG ++ ++ + KV++V+ +M +++K
Sbjct: 53 TVLEVGPGTGNLTVRMLEKARKVIAVEMDPRMAAEITK 90
>SPAC29B12.11c |||human WW domain binding protein-2
ortholog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 27.1 bits (57), Expect = 2.0
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +3
Query: 222 NYGSGPGIPLASLGIPSEG-VKDQYADG---KAAKTWNKFI 332
NY SG +P+ + GIP E VK Q+ +G + WN+ I
Sbjct: 93 NYYSGTVMPVPNGGIPCEAEVKLQFNEGGIFNFVEAWNRLI 133
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 26.6 bits (56), Expect = 2.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -3
Query: 98 EQHGKLYEQRMAILHNIYDTKKLEE 24
E++G + M HN++D KK+E+
Sbjct: 363 ERYGAMISNTMRSWHNLFDDKKMEQ 387
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 26.6 bits (56), Expect = 2.6
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -1
Query: 112 FYRDRSNTENYTNNEWLFYIIFMTQKNWKKIVSNLRL 2
F +RSN ENY N+ F+ +F ++ + ++N +L
Sbjct: 3371 FELERSNNENYYNS---FFFLFEKREQADQFINNFKL 3404
>SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 325
Score = 25.4 bits (53), Expect = 6.0
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +3
Query: 258 LGIPSEGVKDQYADGKAAKTWNKFIGDSNQRTQNYK 365
+GI S G Y+D K WN F + N+ + K
Sbjct: 287 VGISSSGRAAGYSDEKKQNLWNLFAEEVNRHREIVK 322
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 25.0 bits (52), Expect = 7.9
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = -3
Query: 83 LYEQRMAILHNIYDTKKL 30
L EQ++++LH +Y+ +KL
Sbjct: 1486 LDEQKLSLLHQVYEIRKL 1503
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,300,807
Number of Sequences: 5004
Number of extensions: 45107
Number of successful extensions: 135
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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