Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0807
(574 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1445 + 26580293-26580610,26580814-26581314,26581411-265815... 44 7e-05
04_04_1585 + 34616343-34616531,34616677-34616742,34616842-346169... 32 0.28
06_01_0227 - 1733119-1734099 32 0.37
03_06_0644 + 35253858-35254112,35254301-35254390,35254475-352545... 31 0.86
06_01_0375 + 2699179-2699264,2699697-2699786,2699913-2699991,270... 30 1.1
10_08_0451 + 18033065-18033253,18033746-18033805,18034256-180343... 30 1.5
06_02_0199 - 12940459-12940689,12940787-12940930 29 2.0
02_03_0110 - 15350939-15352162,15352591-15353310,15353776-15353949 29 2.0
01_04_0107 + 16086724-16086799,16088007-16088288,16088523-160885... 29 3.5
01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267 29 3.5
10_08_0359 - 17167829-17169595,17169976-17169996 28 4.6
10_08_0357 - 17158414-17160150,17160534-17160710 28 6.1
01_06_0498 + 29810105-29810401,29811448-29812726,29813969-298142... 27 8.0
>07_03_1445 +
26580293-26580610,26580814-26581314,26581411-26581508,
26581900-26581978,26582065-26582325,26582409-26582576,
26582800-26583237
Length = 620
Score = 44.4 bits (100), Expect = 7e-05
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Frame = +3
Query: 324 KFIGDSNQRTQNYKDFLIGLLKNNGCKTVLDAACGTGIDSMMLVNEG-XKVVSVDASDKM 500
+ +GD RT+ Y+D L+G TVLD CGTGI S+ G +V++VD S KM
Sbjct: 268 EMLGDK-VRTEAYRDALLGNPSLMNGATVLDVGCGTGILSLFAAKAGASRVIAVDGSAKM 326
Query: 501 XKQLSKLA 524
+++A
Sbjct: 327 VSVATEVA 334
>04_04_1585 +
34616343-34616531,34616677-34616742,34616842-34616910,
34617408-34617443,34617877-34617942,34618216-34618284,
34618394-34618471,34618674-34618752,34618866-34618960,
34619056-34619140,34619390-34619571,34619681-34619799,
34620529-34620550
Length = 384
Score = 32.3 bits (70), Expect = 0.28
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 348 RTQNYKDFLIGLLKNNGCKTVLDAACGTGIDSMMLVNEGXK-VVSVDASD 494
RT Y+ ++ K K V+D CGTGI S+ G K V +V+AS+
Sbjct: 67 RTDAYRSAIMHHQKFIEGKVVMDVGCGTGILSVFCARAGAKCVYAVEASE 116
>06_01_0227 - 1733119-1734099
Length = 326
Score = 31.9 bits (69), Expect = 0.37
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 405 TVLDAACGTGIDSMMLVNEGXKVVSVDASDKMXKQLSKLA 524
TV DA CGTG ++ L ++G V++ D S M + + A
Sbjct: 152 TVCDAGCGTGSLAIPLASQGASVLASDISAAMVSEAQRQA 191
>03_06_0644 +
35253858-35254112,35254301-35254390,35254475-35254596,
35254731-35254830,35254955-35255001,35255178-35255256,
35255722-35255769
Length = 246
Score = 30.7 bits (66), Expect = 0.86
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +3
Query: 336 DSNQRTQNYKDFL-IGLLKNNGCKTVLDAACGTGIDSMMLVNEGXKVVSVDASDKMXKQL 512
D QRT + + G L TVL CG G D + L G VV +D D ++
Sbjct: 53 DLGQRTPAVVELVHSGTLPAGDATTVLVPGCGAGYDVVALSGPGRFVVGLDICDTAIQKA 112
Query: 513 SKLA 524
+L+
Sbjct: 113 KQLS 116
>06_01_0375 +
2699179-2699264,2699697-2699786,2699913-2699991,
2700816-2700893,2701290-2701338,2702183-2702232,
2702704-2702853,2703437-2703517,2703593-2703609,
2705804-2705893,2706033-2706111,2706234-2706311,
2707554-2707687,2707858-2707936,2708108-2708188,
2708263-2708400
Length = 452
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +3
Query: 408 VLDAACGTGIDSMMLVNEGXKVVSVDASDKMXK 506
V+D CG GI S L G V +DA DK K
Sbjct: 73 VIDVGCGGGILSEPLARMGATVTGIDAVDKNIK 105
>10_08_0451 +
18033065-18033253,18033746-18033805,18034256-18034324,
18034751-18034786,18035081-18035146,18035345-18035443,
18035543-18035620,18035724-18035802,18035999-18036093,
18036251-18036335,18036505-18036698,18036804-18036922,
18037015-18037057
Length = 403
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 402 KTVLDAACGTGIDSMMLVNEG-XKVVSVDASD 494
+ VLD CGTG+ S+ G +V +VDASD
Sbjct: 83 EVVLDVGCGTGVLSIFCAFAGAARVYAVDASD 114
>06_02_0199 - 12940459-12940689,12940787-12940930
Length = 124
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +2
Query: 359 LQRLLDRS-LEEQRLQDCSGRRLWYW 433
L+R D + +E RL+D +GRR W+W
Sbjct: 65 LRRAADEAKVEVARLRDVAGRRFWWW 90
>02_03_0110 - 15350939-15352162,15352591-15353310,15353776-15353949
Length = 705
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +3
Query: 225 YGSGPGIPLASLGIPSEGVKDQYADGKAAKTW--NKFIGDSNQRTQNYKDFLIGLLKNNG 398
Y + P +PLAS+G+P V+D D +T+ +S Q + N++D L +L+ G
Sbjct: 66 YSNHP-LPLASIGVPRGPVQDACVDAVPLQTYVAPTHPVNSIQPSANFRDQLASVLREFG 124
>01_04_0107 +
16086724-16086799,16088007-16088288,16088523-16088585,
16088684-16089045
Length = 260
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 493 SEASTDTTLXPSFTSIMESIPVPQAASRTVLQPL 392
S A ++ T S SI+ES+P PQ +QPL
Sbjct: 57 SMAESENTTSTSHVSIVESLPEPQEPKVEKIQPL 90
>01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267
Length = 769
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +3
Query: 279 VKDQYADGKAAKTWNKFIGDSNQRTQNYKDFLIGLLKNNGCKTVLDAACGTGIDSMMLVN 458
VK+++ D K + + + D ++G+ K N CK DA + S + +
Sbjct: 268 VKEKHGDPKGTEVIEVCRKSVKRVKFSEVDDVLGINKQNICKLFSDALASSSSSSTDMSS 327
Query: 459 EGXKVVSVDA-SDKMXKQLSKLAGR 530
EG K ++ ++ S M + +K A +
Sbjct: 328 EGDKHIAAESCSSHMPETATKEASK 352
>10_08_0359 - 17167829-17169595,17169976-17169996
Length = 595
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 408 VLDAACGTGIDSMMLVNEGXKVVSVDASDKMXKQ 509
++ + CG G+ + +L + G KVV V+ D K+
Sbjct: 91 IVGSGCGGGVAAAVLASAGYKVVVVEKGDYFTKE 124
>10_08_0357 - 17158414-17160150,17160534-17160710
Length = 637
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 408 VLDAACGTGIDSMMLVNEGXKVVSVDASD 494
V+ + CG G+ + +L ++G KVV V+ D
Sbjct: 139 VVGSGCGGGVAAAVLASKGYKVVVVEKGD 167
>01_06_0498 +
29810105-29810401,29811448-29812726,29813969-29814204,
29814327-29814968
Length = 817
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 414 DAACGTGIDSMMLVNEGXKVVSVDASD 494
DA CGTG S+ + VV+ DAS+
Sbjct: 593 DAGCGTGQASISIAEHYDSVVATDASE 619
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,448,711
Number of Sequences: 37544
Number of extensions: 280604
Number of successful extensions: 736
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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