Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0807
         (574 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6783| Best HMM Match : Porphobil_deamC (HMM E-Value=5.8)           109   2e-24
SB_23832| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.054
SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.072
SB_23673| Best HMM Match : DUF855 (HMM E-Value=0.52)                   31   0.51 
SB_18292| Best HMM Match : UPF0041 (HMM E-Value=4.1)                   29   2.7  
SB_28454| Best HMM Match : SDA1 (HMM E-Value=1.7)                      28   4.7  
SB_8757| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      28   6.2  
SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)                  27   8.2  

>SB_6783| Best HMM Match : Porphobil_deamC (HMM E-Value=5.8)
          Length = 382

 Score =  109 bits (262), Expect = 2e-24
 Identities = 49/98 (50%), Positives = 66/98 (67%), Gaps = 1/98 (1%)
 Frame = +3

Query: 255 SLGIPSEGVKDQYADGKAAKTWNKFIGDSNQRTQNYKDFLIGLLKNNGCKTVLDAACGTG 434
           SLG+P+ G+ DQYADGKAAK W  +IG   +RT++Y++F   LL+      VLD +CGTG
Sbjct: 159 SLGVPATGIPDQYADGKAAKVWQHYIGGHKKRTESYREFFCNLLRERNIHNVLDVSCGTG 218

Query: 435 IDSMMLVNEGXKVVSVDASDKMXKQLSKLA-GRRERTP 545
           +DS+ML+  G  V SVDASDKM K   ++   RR+  P
Sbjct: 219 VDSIMLLENGFCVTSVDASDKMLKDALRIRWNRRKEEP 256


>SB_23832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 706

 Score = 34.7 bits (76), Expect = 0.054
 Identities = 20/53 (37%), Positives = 27/53 (50%)
 Frame = +3

Query: 318 WNKFIGDSNQRTQNYKDFLIGLLKNNGCKTVLDAACGTGIDSMMLVNEGXKVV 476
           W+  + +  QR   YK  +   + +NGC  VLD   G+GI SM  V  G K V
Sbjct: 136 WHFRMLNDRQRNLAYKKAISNAV-SNGCDIVLDIGSGSGILSMFAVQAGAKKV 187


>SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1622

 Score = 34.3 bits (75), Expect = 0.072
 Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
 Frame = +3

Query: 285 DQYADGKAAKTWNKFIGDSNQRTQNYKDFL---IGLLKNNGCKTVLDAACGTGIDSMMLV 455
           + +AD  + K   + + D   RT++Y+  +    G  K+   K VLD  CGTGI S+   
Sbjct: 115 EYFADYGSLKIHLEMLKDK-PRTESYRMAIEQGAGYFKD---KVVLDVGCGTGILSLFCA 170

Query: 456 NEG--XKVVSVDASD--KMXKQLSK 518
            EG   KV +V+AS+  K+ +++ K
Sbjct: 171 REGKASKVYAVEASEIAKLTEEIIK 195


>SB_23673| Best HMM Match : DUF855 (HMM E-Value=0.52)
          Length = 380

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
 Frame = +3

Query: 270 SEGVKDQYADGKAAKTWNKFIGDS-----NQRTQNYKDFLIGLLKNNGCKTVLDAACGTG 434
           S G KD+   G +  T   +  DS       RT  Y++ +         K VLD  CGTG
Sbjct: 137 SNGAKDKPKPGASEMTSADYYFDSYAHFDEVRTLTYRNSMYHNKHLFRDKIVLDVGCGTG 196

Query: 435 IDSMMLVNEGXKVV 476
           I SM     G K V
Sbjct: 197 ILSMFAAKAGAKHV 210


>SB_18292| Best HMM Match : UPF0041 (HMM E-Value=4.1)
          Length = 377

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 106 RDRSNTENYTNNEWLFYIIFMTQKNWKKIVSNLRL 2
           R  SN  NY N E + Y++F+ Q+  KK + +  L
Sbjct: 288 RAHSNGANYLNTELMKYVLFILQQRNKKSMESFDL 322


>SB_28454| Best HMM Match : SDA1 (HMM E-Value=1.7)
          Length = 383

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = +3

Query: 246 PLASLGIPSEGVKDQYADGKAAKTWNKFIGDSNQRTQNYKDFLIGLL 386
           PL+S+ +  + +K+ +AD   A T N+  G  N+R ++  + +  +L
Sbjct: 168 PLSSIKLTPKALKEIFADDSKATTKNREQGHINERVKDASNMIREML 214


>SB_8757| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 539

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = -2

Query: 168 HYRHFINNSDLSIFKFIKSFIETGATRKIIRTTNGY 61
           HYR   N          K F+E+G  RK  RT  GY
Sbjct: 259 HYRRHSNEKHFKCSYCNKRFVESGDMRKHERTHTGY 294


>SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)
          Length = 1536

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 153 INNSDLSIFKFIKSFIETGATRKIIR 76
           INN  L +FKF ++  E+G  ++I++
Sbjct: 400 INNEPLDLFKFYRAVRESGGLQEIVK 425


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,654,857
Number of Sequences: 59808
Number of extensions: 315742
Number of successful extensions: 1079
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)