Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0806
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    28   1.2  
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom...    27   2.9  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   5.0  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    25   8.8  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   8.8  

>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 494 DITIPFSTLESFKSGAGGSAFQLGGWYC 411
           D+ +P   + ++KS  GGS  Q  GW C
Sbjct: 469 DLPLPHEHITNYKSTFGGSLSQWIGWLC 496


>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 500 FQDITIPFSTLESFKSGAGGSAFQLGGWYCF 408
           FQ   +PF  L   +SG   SAF LGGW  +
Sbjct: 8   FQPKNVPFRFLG--RSGLKVSAFSLGGWLTY 36


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 19/76 (25%), Positives = 29/76 (38%)
 Frame = +1

Query: 364 PNQVHRHPAPMPEIMKQYHPPNWKALPPAPDLKLSKVENGIVISWKINDTRKIVTKK*PA 543
           PNQ    P P P+ +     PN  A P       S V+N   +    +    +V +   A
Sbjct: 246 PNQAALPPIP-PQALPANGTPNTLASPVTLPAANSAVQNAQPVPMTSSPAMAVVPQNKTA 304

Query: 544 INCTLTKRRRRRLAPP 591
              TL  ++   + PP
Sbjct: 305 ATSTLAAQQGANVLPP 320


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +1

Query: 280 KPHPPGMQRPRTAAPNIGRAQNQIKTNKPNQVHRHPAPMPEIMKQYHPPNWKALPPAPDL 459
           +PH         A PN+   +N   T  PN   + P+  P  +   +      LPP+P L
Sbjct: 243 RPHTQYQNNLLRAQPNVN-CEN-FPTTVPNYPFQQPSYNPNALVPSYTTLVSQLPPSPCL 300

Query: 460 KLS 468
            +S
Sbjct: 301 TVS 303


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 387 GTHARDYEAVPST*LESAPARTRFETFQSRKRYSDILENQ*YQEDSYEE 533
           GT  R    +PS   E+   +   E+F+ RK +  + E    +EDS E+
Sbjct: 325 GTPDRANSPIPSQLSEN---KLTLESFEHRKSFDQVREEAPLEEDSLEQ 370


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,305,102
Number of Sequences: 5004
Number of extensions: 71574
Number of successful extensions: 215
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)