Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0806
(753 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0567 + 34771476-34772234 35 0.080
09_04_0506 - 18188785-18190599 33 0.32
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767... 31 1.3
07_03_1160 - 24430240-24431268 30 2.3
04_03_0904 + 20717005-20718087 30 2.3
02_01_0017 - 112766-113650 30 2.3
10_08_1037 - 22477358-22478752 29 3.0
05_07_0016 + 27066856-27067032,27067431-27067515,27067977-270680... 29 3.0
03_01_0393 - 3062859-3062972,3063027-3063311,3063472-3063759,306... 29 3.0
07_03_1529 + 27491963-27492465,27493045-27493154,27493384-274935... 29 4.0
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 29 5.2
08_02_0450 - 17266977-17267165,17268017-17268053,17268139-172695... 28 6.9
02_05_0868 + 32342967-32343915,32344389-32344447 28 6.9
07_03_1157 - 24419157-24419948 28 9.2
03_06_0642 + 35239658-35240083,35240167-35240238,35240305-352409... 28 9.2
01_06_0678 - 31114259-31114321,31114508-31114552,31114644-311147... 28 9.2
>03_06_0567 + 34771476-34772234
Length = 252
Score = 34.7 bits (76), Expect = 0.080
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +1
Query: 373 VHRHPAPMPEIMKQYHPPNWKALPPAPDLKLSKVENGIVIS 495
+H HP P P + + PP+ LP A D+ + KVE G+++S
Sbjct: 26 LHAHPPPPPPHVVR-RPPSSDELPAAADVTVCKVEGGLLMS 65
>09_04_0506 - 18188785-18190599
Length = 604
Score = 32.7 bits (71), Expect = 0.32
Identities = 15/57 (26%), Positives = 22/57 (38%)
Frame = +1
Query: 277 IKPHPPGMQRPRTAAPNIGRAQNQIKTNKPNQVHRHPAPMPEIMKQYHPPNWKALPP 447
+ P PP Q + P + ++PN VH P P P + PP + P
Sbjct: 96 LPPPPPQRQPEKVHIPGVAAVPPAPVPDRPNPVHLPPQPQPPVAAAPPPPPHNQIQP 152
>03_03_0008 - 13674602-13674708,13675272-13675439,13676169-13676787,
13676868-13677330,13677855-13678036,13678093-13678235,
13678315-13678423,13679000-13679456,13680490-13682473,
13682507-13682626,13682920-13682971
Length = 1467
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 322 PNIGRAQNQIKTNKPNQVHRHPAPMPEIMKQYHPP 426
P+ RA N I+T +PN V P M + Q PP
Sbjct: 1163 PHPTRATNNIQTQQPNSVVERPGSMNPSVAQLQPP 1197
>07_03_1160 - 24430240-24431268
Length = 342
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +1
Query: 271 VLIKPHPPGMQRPRTAAPNIGRAQNQIKTNKPNQVHRHPAPMPE-IMKQYHPPNWKA-LP 444
+L P P G P + AP++ Q N P+ ++ P P+P +K PP +P
Sbjct: 194 MLPMPKPDGS--PNSYAPSVPDQSTQPNPNGPSIPNQPPQPIPNGPIKPDQPPQPNPDMP 251
Query: 445 PAPD 456
P PD
Sbjct: 252 PKPD 255
>04_03_0904 + 20717005-20718087
Length = 360
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/59 (32%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Frame = +1
Query: 280 KPHPPGMQRPRTAAPNIGRAQNQIKTNKPNQVHRHPAPMPEIMKQYHPPNWKALP-PAP 453
KP P P T P + Q K N P P P P + PP +K P P P
Sbjct: 199 KPQPKPTPTPYTPTPTPPSYKPQPKPNPPPTYKPQPKPNPPPTYKPAPPTYKPQPKPNP 257
>02_01_0017 - 112766-113650
Length = 294
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +1
Query: 328 IGRAQNQIKTNKPNQVHRHPAPMPEIMKQYHPPNWKALPPAPDLKLSKVENGIVISWKI 504
+ AQ+Q ++ P ++ P P P +PP A PP LK + E ++ SW++
Sbjct: 45 VSSAQSQSQSQSPTRIPPPPTPPPRPTTTTNPP--CAAPPEKHLK-KQGEAEVINSWEL 100
>10_08_1037 - 22477358-22478752
Length = 464
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/71 (28%), Positives = 28/71 (39%)
Frame = +1
Query: 274 LIKPHPPGMQRPRTAAPNIGRAQNQIKTNKPNQVHRHPAPMPEIMKQYHPPNWKALPPAP 453
L K PP + P P + Q + P HR P P P M PP W P
Sbjct: 269 LQKIRPPPISTPVARPPPVHNHQIPNPNHNP-AFHRPPPPQPMPMPMPGPPVWADSPVTA 327
Query: 454 DLKLSKVENGI 486
+++ +EN +
Sbjct: 328 YMRI--LENSL 336
>05_07_0016 +
27066856-27067032,27067431-27067515,27067977-27068044,
27068128-27068178,27068256-27068329,27068794-27068852,
27068926-27069002,27069173-27069289
Length = 235
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -2
Query: 557 SVQLIAGYFFVTIFLVSLIFQDITIPFSTLESF-KSGAGG 441
SV + YF + + V +I+ D+ IPF+ L K G GG
Sbjct: 110 SVAQLVSYFKIPLSQVLVIYDDLDIPFAKLRLLPKGGHGG 149
>03_01_0393 -
3062859-3062972,3063027-3063311,3063472-3063759,
3063844-3064161,3064232-3064415,3064504-3064659,
3066394-3066620,3066734-3066804,3067090-3067534
Length = 695
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -2
Query: 203 YW-LSPDQNVIFAGP*EFAVKQGVQAVVDYERQPYWVARHQSGLPLRTYL*IVFV 42
+W P IF P E A+ +A Y+ Y++AR S LPL +L ++F+
Sbjct: 573 FWGFFPVFTAIFTFPQERAMLNKERAADMYKLSAYFLARTTSDLPLDLFLPVIFM 627
>07_03_1529 +
27491963-27492465,27493045-27493154,27493384-27493510,
27494082-27494430,27494975-27495251,27496236-27496333,
27498090-27498214,27498270-27498326,27498328-27498370,
27498581-27498667,27498802-27498882,27499735-27499901,
27499987-27500098,27500188-27500390,27500473-27500607,
27501106-27501205
Length = 857
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = -3
Query: 265 EYSSLTVRTRTTNGNEHFPMAIGYPLTK 182
E +S +V T+T NG+ HF +A GYPL K
Sbjct: 51 ETASTSV-TKTVNGSHHFKIA-GYPLAK 76
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 28.7 bits (61), Expect = 5.2
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = +1
Query: 283 PH--PPGMQRPRTA-APNIGRAQNQIKTNKPNQVHRHPAPMPEIMKQYHPPNWKALPPAP 453
PH PPG RP AP G Q P + R+P P P +M+ PP + +PP
Sbjct: 121 PHVMPPGAVRPPAMYAPQPGVYLQQPGAALPPGMPRYPGPYP-MMRPGFPP--RPMPPVG 177
Query: 454 DLKLSK 471
+ L +
Sbjct: 178 VMPLQR 183
>08_02_0450 -
17266977-17267165,17268017-17268053,17268139-17269514,
17285369-17286055,17286146-17286343
Length = 828
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/57 (29%), Positives = 22/57 (38%)
Frame = +1
Query: 283 PHPPGMQRPRTAAPNIGRAQNQIKTNKPNQVHRHPAPMPEIMKQYHPPNWKALPPAP 453
P PP + P + P + P+Q PAP P + P K PPAP
Sbjct: 528 PEPPSPRHPPSPPPLRSPPRQPTPPPSPSQQPPLPAPQP-VQASPTSPAKKHAPPAP 583
>02_05_0868 + 32342967-32343915,32344389-32344447
Length = 335
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/53 (33%), Positives = 21/53 (39%)
Frame = +1
Query: 295 GMQRPRTAAPNIGRAQNQIKTNKPNQVHRHPAPMPEIMKQYHPPNWKALPPAP 453
G + P AAP GRA Q P + R P P P PP + P P
Sbjct: 85 GGEAPPVAAP--GRAFRQPAPAVPGRAFRQPGPAPAPSPAPAPPRRRMPSPPP 135
>07_03_1157 - 24419157-24419948
Length = 263
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +1
Query: 283 PHPPGMQRPRTAAPNIGRAQNQIKTNKPNQVHRHPAPMPEIMKQYHPPNWKALPPAP 453
PHP + P+ P K +P HPA +PE+ K PP+ +P P
Sbjct: 81 PHPVVPELPKPELPPHPVVPELPKHEEPP----HPAVVPELPKHEEPPHPAVVPEFP 133
>03_06_0642 +
35239658-35240083,35240167-35240238,35240305-35240919,
35241253-35241435,35241604-35241663,35241733-35241936,
35242497-35242745,35243609-35243707,35243760-35243858,
35244463-35244480,35244668-35244862,35244981-35245073,
35245265-35245531,35245884-35246102
Length = 932
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Frame = +1
Query: 307 PRTAAPNIGRAQNQIK------TNKPNQVHRHPAPMPEIMKQYHPPNWKALPPAP 453
PR P+ R+ N P R P P PE KQ PP PPAP
Sbjct: 33 PRAPFPSTSRSSNPYSFPDRRPPPTPRSRSRSPLPPPEQQKQQQPPP-TTPPPAP 86
>01_06_0678 -
31114259-31114321,31114508-31114552,31114644-31114742,
31114827-31114872,31115026-31115102,31115385-31115432,
31120640-31120708,31120848-31120853,31120955-31121032,
31121246-31121344,31121427-31121489,31122642-31122713,
31122800-31122874,31122965-31123021,31123983-31124186,
31124317-31124394,31124485-31124547,31124646-31125284,
31125367-31125416,31125496-31125576,31125896-31125923
Length = 679
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 516 EDSYEEIASYQLYAYQETSAPPSTALWKKIGDVKAL-PLPM 635
E Y E+ + A + A S + W++ D+KAL PLP+
Sbjct: 560 EKRYRELTDLLMEAERSRVARRSASAWEEDADIKALEPLPL 600
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,560,078
Number of Sequences: 37544
Number of extensions: 568006
Number of successful extensions: 1579
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1572
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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