Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0806
         (753 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5677| Best HMM Match : fn3 (HMM E-Value=0.0092)                     77   2e-14
SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083)                    73   3e-13
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)            32   0.57 
SB_56721| Best HMM Match : DUF755 (HMM E-Value=0.52)                   31   0.76 
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.76 
SB_16164| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_41449| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_30413| Best HMM Match : WSC (HMM E-Value=2.4)                       28   7.1  
SB_16280| Best HMM Match : PA14 (HMM E-Value=0.00074)                  28   7.1  
SB_7753| Best HMM Match : RVT_1 (HMM E-Value=0.089)                    28   9.4  
SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11)               28   9.4  

>SB_5677| Best HMM Match : fn3 (HMM E-Value=0.0092)
          Length = 1146

 Score = 77.0 bits (181), Expect = 2e-14
 Identities = 36/62 (58%), Positives = 48/62 (77%), Gaps = 1/62 (1%)
 Frame = +3

Query: 525  YEEIASYQLYAYQE-TSAPPSTALWKKIGDVKALPLPMACTLTHFTAGYSYYFAVRAVDV 701
            +E+I +Y+L+A Q+ T A   + +WKKIG VKALPLPMACTLT F++G  Y FAVRAVD 
Sbjct: 1070 HEQIDNYELFACQDGTEASTPSIMWKKIGVVKALPLPMACTLTQFSSGSCYKFAVRAVDT 1129

Query: 702  KS 707
            ++
Sbjct: 1130 RA 1131



 Score = 38.3 bits (85), Expect = 0.007
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
 Frame = +1

Query: 268  AVLIKP-HPPGMQRPRTAAPNIGRAQNQIKTNKPNQVHRHPAPMPEIMKQYHPPNWKAL- 441
            A +++P HP  + +P ++   +   Q  +     +     P  +  +M    P    +L 
Sbjct: 983  AQIMRPAHPQMISQPVSSLGRLPTRQQDVHHAAASSTAHQPNVITRVMPTASPREPVSLL 1042

Query: 442  -PPAPDLKLSKVENGIVISWKIN 507
             PP P+  ++ V+NGIV+SW +N
Sbjct: 1043 PPPKPNASIAVVQNGIVLSWNMN 1065


>SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083)
          Length = 1266

 Score = 72.9 bits (171), Expect = 3e-13
 Identities = 34/59 (57%), Positives = 39/59 (66%)
 Frame = +3

Query: 522  SYEEIASYQLYAYQETSAPPSTALWKKIGDVKALPLPMACTLTHFTAGYSYYFAVRAVD 698
            ++  I  YQLYA Q+       A WKKIG V ALPLPMACTLT F +G  Y+FAVRA D
Sbjct: 1191 NHARITRYQLYALQDLGPNGQQAQWKKIGVVNALPLPMACTLTQFMSGNKYHFAVRATD 1249



 Score = 34.7 bits (76), Expect = 0.082
 Identities = 19/71 (26%), Positives = 31/71 (43%)
 Frame = +1

Query: 292  PGMQRPRTAAPNIGRAQNQIKTNKPNQVHRHPAPMPEIMKQYHPPNWKALPPAPDLKLSK 471
            PG   P        + Q ++    P+   + P P   + +Q  PP      P P + ++ 
Sbjct: 1122 PGSSPPVRHQAEFLQTQTRLSMQTPDGTTQVPPPGAPVPQQKDPP------PRPSVSIAV 1175

Query: 472  VENGIVISWKI 504
            V NGIV+SW +
Sbjct: 1176 VSNGIVLSWNM 1186


>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
          Length = 1439

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 19/70 (27%), Positives = 33/70 (47%)
 Frame = +2

Query: 38  EKRTLSKDTSVTVDLTDDEPPNKVVARNPQPPVRLVSPQTLMGPQRSHFGQGIANSHRKV 217
           + + ++  ++VT  +T+  PP+ VVA  P  P    +P  ++ P  S F      S   V
Sbjct: 320 QPQMVAPSSTVTPPVTEPAPPSSVVAPPPAVPTPATAPPPVVAPPPSVFA-----SSSGV 374

Query: 218 FIPISGPGPN 247
             P+  P P+
Sbjct: 375 PTPVKAPPPS 384


>SB_56721| Best HMM Match : DUF755 (HMM E-Value=0.52)
          Length = 516

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = +1

Query: 346 QIKTNKPNQVHRHPAPMPEIMKQYHPPNWKALPPAPDLKLSKVENGIVISWKINDTR 516
           +I T  P    +H +P P++ K   PP+W +L P  D ++ + E G  + ++ +  R
Sbjct: 69  EIMTPTPEPSPKHRSPSPKLTKTPTPPSW-SLTPLHD-EVDEEEEGSFVQFRCSPQR 123


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +1

Query: 283  PHPPGMQRPRTAAPNIGRAQNQIKTNKPNQVHRHPAPMPEIMKQYHPPN 429
            P PP  +R ++ +P+  R + +  +N P  +   P P P+  +   PP+
Sbjct: 915  PSPPPRRRRKSPSPSPPRRRRRSPSNSPPPMRSSPLPPPQRKRASTPPS 963


>SB_16164| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 364

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -1

Query: 558 KRTVDSWLFLRNY-LPGIIDFPGYHYTVFYFGKFQIGCGRERFPVRW 421
           KR   SW   + Y +P    FP YH   F +G  Q+GCG    PV W
Sbjct: 141 KREYQSWSAWKIYRVPYEYAFPDYHQ--FKYGGCQVGCG----PVAW 181


>SB_41449| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 807

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = +3

Query: 558 YQETSAPPSTALWKKIGDVKALPLPMACTLTHFTAGYSYYFAVRAVDVKSARTFQ 722
           Y  T APP  A    I  VKA+   +  T+  FT G        A+ + S   F+
Sbjct: 398 YVFTDAPPKDATPDNIQSVKAMAEYLGVTINFFTTGMCNQAGSNAISLPSPDRFK 452


>SB_30413| Best HMM Match : WSC (HMM E-Value=2.4)
          Length = 259

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 343 NQIKTNKPNQVHRHPAPMPEIMKQYH-PPN 429
           N ++    N    HP P+PEI++ +  PPN
Sbjct: 28  NFVRVGCYNDPQEHPRPLPEILENFRLPPN 57


>SB_16280| Best HMM Match : PA14 (HMM E-Value=0.00074)
          Length = 643

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 152 AVKQGVQAVVDYERQPYWVARHQSGLPLRTYL 57
           A K G Q  +  E++ Y+  RH+ G+ +RTYL
Sbjct: 144 ANKSGYQTHLGLEKE-YFAKRHEMGMRMRTYL 174


>SB_7753| Best HMM Match : RVT_1 (HMM E-Value=0.089)
          Length = 723

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/60 (21%), Positives = 28/60 (46%)
 Frame = +2

Query: 26  QKIPEKRTLSKDTSVTVDLTDDEPPNKVVARNPQPPVRLVSPQTLMGPQRSHFGQGIANS 205
           ++  E+  LS      +DL DD+  +  + +NPQPP  +      +    ++ G+ +  +
Sbjct: 599 EETSEEENLSDFDEHIMDLPDDKDESTPLIQNPQPPGNIEDINLYLNQDLANVGEWLVTN 658


>SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11)
          Length = 1704

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 388  APMPEIMKQYHPPNWKALPPAPD 456
            AP+P     + P   K+ PPAPD
Sbjct: 1055 APLPSFDAMFSPTKQKSFPPAPD 1077


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,893,245
Number of Sequences: 59808
Number of extensions: 592847
Number of successful extensions: 1635
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1632
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)