BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0806 (753 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_5677| Best HMM Match : fn3 (HMM E-Value=0.0092) 77 2e-14 SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083) 73 3e-13 SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4) 32 0.57 SB_56721| Best HMM Match : DUF755 (HMM E-Value=0.52) 31 0.76 SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76 SB_16164| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3 SB_41449| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4 SB_30413| Best HMM Match : WSC (HMM E-Value=2.4) 28 7.1 SB_16280| Best HMM Match : PA14 (HMM E-Value=0.00074) 28 7.1 SB_7753| Best HMM Match : RVT_1 (HMM E-Value=0.089) 28 9.4 SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11) 28 9.4 >SB_5677| Best HMM Match : fn3 (HMM E-Value=0.0092) Length = 1146 Score = 77.0 bits (181), Expect = 2e-14 Identities = 36/62 (58%), Positives = 48/62 (77%), Gaps = 1/62 (1%) Frame = +3 Query: 525 YEEIASYQLYAYQE-TSAPPSTALWKKIGDVKALPLPMACTLTHFTAGYSYYFAVRAVDV 701 +E+I +Y+L+A Q+ T A + +WKKIG VKALPLPMACTLT F++G Y FAVRAVD Sbjct: 1070 HEQIDNYELFACQDGTEASTPSIMWKKIGVVKALPLPMACTLTQFSSGSCYKFAVRAVDT 1129 Query: 702 KS 707 ++ Sbjct: 1130 RA 1131 Score = 38.3 bits (85), Expect = 0.007 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 3/83 (3%) Frame = +1 Query: 268 AVLIKP-HPPGMQRPRTAAPNIGRAQNQIKTNKPNQVHRHPAPMPEIMKQYHPPNWKAL- 441 A +++P HP + +P ++ + Q + + P + +M P +L Sbjct: 983 AQIMRPAHPQMISQPVSSLGRLPTRQQDVHHAAASSTAHQPNVITRVMPTASPREPVSLL 1042 Query: 442 -PPAPDLKLSKVENGIVISWKIN 507 PP P+ ++ V+NGIV+SW +N Sbjct: 1043 PPPKPNASIAVVQNGIVLSWNMN 1065 >SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083) Length = 1266 Score = 72.9 bits (171), Expect = 3e-13 Identities = 34/59 (57%), Positives = 39/59 (66%) Frame = +3 Query: 522 SYEEIASYQLYAYQETSAPPSTALWKKIGDVKALPLPMACTLTHFTAGYSYYFAVRAVD 698 ++ I YQLYA Q+ A WKKIG V ALPLPMACTLT F +G Y+FAVRA D Sbjct: 1191 NHARITRYQLYALQDLGPNGQQAQWKKIGVVNALPLPMACTLTQFMSGNKYHFAVRATD 1249 Score = 34.7 bits (76), Expect = 0.082 Identities = 19/71 (26%), Positives = 31/71 (43%) Frame = +1 Query: 292 PGMQRPRTAAPNIGRAQNQIKTNKPNQVHRHPAPMPEIMKQYHPPNWKALPPAPDLKLSK 471 PG P + Q ++ P+ + P P + +Q PP P P + ++ Sbjct: 1122 PGSSPPVRHQAEFLQTQTRLSMQTPDGTTQVPPPGAPVPQQKDPP------PRPSVSIAV 1175 Query: 472 VENGIVISWKI 504 V NGIV+SW + Sbjct: 1176 VSNGIVLSWNM 1186 >SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4) Length = 1439 Score = 31.9 bits (69), Expect = 0.57 Identities = 19/70 (27%), Positives = 33/70 (47%) Frame = +2 Query: 38 EKRTLSKDTSVTVDLTDDEPPNKVVARNPQPPVRLVSPQTLMGPQRSHFGQGIANSHRKV 217 + + ++ ++VT +T+ PP+ VVA P P +P ++ P S F S V Sbjct: 320 QPQMVAPSSTVTPPVTEPAPPSSVVAPPPAVPTPATAPPPVVAPPPSVFA-----SSSGV 374 Query: 218 FIPISGPGPN 247 P+ P P+ Sbjct: 375 PTPVKAPPPS 384 >SB_56721| Best HMM Match : DUF755 (HMM E-Value=0.52) Length = 516 Score = 31.5 bits (68), Expect = 0.76 Identities = 16/57 (28%), Positives = 30/57 (52%) Frame = +1 Query: 346 QIKTNKPNQVHRHPAPMPEIMKQYHPPNWKALPPAPDLKLSKVENGIVISWKINDTR 516 +I T P +H +P P++ K PP+W +L P D ++ + E G + ++ + R Sbjct: 69 EIMTPTPEPSPKHRSPSPKLTKTPTPPSW-SLTPLHD-EVDEEEEGSFVQFRCSPQR 123 >SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1272 Score = 31.5 bits (68), Expect = 0.76 Identities = 13/49 (26%), Positives = 25/49 (51%) Frame = +1 Query: 283 PHPPGMQRPRTAAPNIGRAQNQIKTNKPNQVHRHPAPMPEIMKQYHPPN 429 P PP +R ++ +P+ R + + +N P + P P P+ + PP+ Sbjct: 915 PSPPPRRRRKSPSPSPPRRRRRSPSNSPPPMRSSPLPPPQRKRASTPPS 963 >SB_16164| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 364 Score = 30.7 bits (66), Expect = 1.3 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Frame = -1 Query: 558 KRTVDSWLFLRNY-LPGIIDFPGYHYTVFYFGKFQIGCGRERFPVRW 421 KR SW + Y +P FP YH F +G Q+GCG PV W Sbjct: 141 KREYQSWSAWKIYRVPYEYAFPDYHQ--FKYGGCQVGCG----PVAW 181 >SB_41449| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 807 Score = 28.7 bits (61), Expect = 5.4 Identities = 17/55 (30%), Positives = 23/55 (41%) Frame = +3 Query: 558 YQETSAPPSTALWKKIGDVKALPLPMACTLTHFTAGYSYYFAVRAVDVKSARTFQ 722 Y T APP A I VKA+ + T+ FT G A+ + S F+ Sbjct: 398 YVFTDAPPKDATPDNIQSVKAMAEYLGVTINFFTTGMCNQAGSNAISLPSPDRFK 452 >SB_30413| Best HMM Match : WSC (HMM E-Value=2.4) Length = 259 Score = 28.3 bits (60), Expect = 7.1 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = +1 Query: 343 NQIKTNKPNQVHRHPAPMPEIMKQYH-PPN 429 N ++ N HP P+PEI++ + PPN Sbjct: 28 NFVRVGCYNDPQEHPRPLPEILENFRLPPN 57 >SB_16280| Best HMM Match : PA14 (HMM E-Value=0.00074) Length = 643 Score = 28.3 bits (60), Expect = 7.1 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -2 Query: 152 AVKQGVQAVVDYERQPYWVARHQSGLPLRTYL 57 A K G Q + E++ Y+ RH+ G+ +RTYL Sbjct: 144 ANKSGYQTHLGLEKE-YFAKRHEMGMRMRTYL 174 >SB_7753| Best HMM Match : RVT_1 (HMM E-Value=0.089) Length = 723 Score = 27.9 bits (59), Expect = 9.4 Identities = 13/60 (21%), Positives = 28/60 (46%) Frame = +2 Query: 26 QKIPEKRTLSKDTSVTVDLTDDEPPNKVVARNPQPPVRLVSPQTLMGPQRSHFGQGIANS 205 ++ E+ LS +DL DD+ + + +NPQPP + + ++ G+ + + Sbjct: 599 EETSEEENLSDFDEHIMDLPDDKDESTPLIQNPQPPGNIEDINLYLNQDLANVGEWLVTN 658 >SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11) Length = 1704 Score = 27.9 bits (59), Expect = 9.4 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = +1 Query: 388 APMPEIMKQYHPPNWKALPPAPD 456 AP+P + P K+ PPAPD Sbjct: 1055 APLPSFDAMFSPTKQKSFPPAPD 1077 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 25,893,245 Number of Sequences: 59808 Number of extensions: 592847 Number of successful extensions: 1635 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 1479 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1632 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 2046258890 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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