Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0806
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   1.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.3  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   4.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   4.1  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 14  SNTAQKIPEKRTLSKDTSVTVDLTDDEPPNKVVARNPQPPVRLVSPQTLMGP 169
           S+TA  +      S    + VD+ D + P  +  ++P P     SP+ L+GP
Sbjct: 846 SSTAATLVLSGCPSNMMELQVDIADSQQPLNLSKKSPSP-----SPRPLVGP 892


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = +2

Query: 125 QPPVRLV--SPQTLMGPQRSHFGQGIANSH-RKVFIPISGPGPNGQGGVLKL 271
           +PPV  +  S + ++       G+   NS  RK   PI+G G +G G    L
Sbjct: 558 KPPVATMYGSDEEIINSSNDEGGKTSPNSAVRKCMSPINGSGASGSGSAENL 609


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -1

Query: 633 WAEAEPSRRQFFSTRRC*AAPTSLGKRTVDSWLFLRNYLPGIIDFP 496
           W       +QFF    C   P   G++   +  ++R YLP + +FP
Sbjct: 416 WLSCSSFFQQFF---HC-YCPVRFGRKADPNGDYIRRYLPVLKNFP 457


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 616 FTSPIFFHKAVLG 578
           F  PI+FH  VLG
Sbjct: 455 FIEPIYFHSIVLG 467


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/28 (25%), Positives = 17/28 (60%)
 Frame = -2

Query: 557 SVQLIAGYFFVTIFLVSLIFQDITIPFS 474
           ++Q +  YF V++ +  L+   + +PF+
Sbjct: 216 ALQTVTNYFIVSLAVADLLVAVLVMPFA 243


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,555
Number of Sequences: 438
Number of extensions: 5399
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)