Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0806
         (753 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g21215.1 68416.m02681 RNA-binding protein, putative contains ...    31   0.62 
At5g37510.2 68418.m04518 NADH-ubiquinone dehydrogenase, mitochon...    29   4.4  
At5g37510.1 68418.m04517 NADH-ubiquinone dehydrogenase, mitochon...    29   4.4  
At2g40940.1 68415.m05055 ethylene response sensor / ethylene-res...    29   4.4  
At2g33580.1 68415.m04115 protein kinase family protein / peptido...    29   4.4  
At1g54270.1 68414.m06187 eukaryotic translation initiation facto...    29   4.4  
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si...    28   5.8  
At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3 ...    28   7.7  
At1g22890.1 68414.m02859 expressed protein                             28   7.7  

>At3g21215.1 68416.m02681 RNA-binding protein, putative contains RNA
           recognition motif, Pfam:PF00076; contains AT-AC splice
           sites at intron 8
          Length = 339

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +1

Query: 286 HPPGMQRPRTAAPNIGRAQNQIKTNKPNQVHRHPAPMPEIMKQYHPPNWKAL 441
           HP   Q P   AP    A +      P  +H HP P P ++  ++ P +  L
Sbjct: 7   HPYHQQWPPAGAPPPPAAVSSAAPPHPPPIHHHPPPPPVLVDNHNRPPYDEL 58


>At5g37510.2 68418.m04518 NADH-ubiquinone dehydrogenase,
           mitochondrial, putative similar to NADH-ubiquinone
           oxidoreductase 75 kDa subunit, mitochondrial from
           Solanum tuberosum [SP|Q43644]
          Length = 748

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
 Frame = +2

Query: 35  PEKRTLSKDTS-----VTVDLTDDEPPNKVVARNPQPPVRLVSPQTLMGPQRSHF 184
           P  R L   TS       V   + + P       P+PP +++ P+  +G  R HF
Sbjct: 13  PASRLLQSQTSNFFLRTIVSKPELQSPESAAVSEPEPPTQILPPRNPVGGARVHF 67


>At5g37510.1 68418.m04517 NADH-ubiquinone dehydrogenase,
           mitochondrial, putative similar to NADH-ubiquinone
           oxidoreductase 75 kDa subunit, mitochondrial from
           Solanum tuberosum [SP|Q43644]
          Length = 745

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
 Frame = +2

Query: 35  PEKRTLSKDTS-----VTVDLTDDEPPNKVVARNPQPPVRLVSPQTLMGPQRSHF 184
           P  R L   TS       V   + + P       P+PP +++ P+  +G  R HF
Sbjct: 13  PASRLLQSQTSNFFLRTIVSKPELQSPESAAVSEPEPPTQILPPRNPVGGARVHF 67


>At2g40940.1 68415.m05055 ethylene response sensor /
           ethylene-responsive sensor (ERS) identical to ethylene
           response sensor (ERS) [Arabidopsis thaliana] GI:1046225
          Length = 613

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 501 FPGYHYTVFYFGKFQIGCGRERFPVRWMVLLHN 403
           FP Y + +  FG F I CG   F   WM  +H+
Sbjct: 49  FP-YKWVLMQFGAFIILCGATHFINLWMFFMHS 80


>At2g33580.1 68415.m04115 protein kinase family protein /
           peptidoglycan-binding LysM domain-containing protein
           protein kinase [Arabidopsis thaliana] GI:2852449;
           contains Pfam profiles PF01476: LysM domain, PF00069:
           Protein kinase domain
          Length = 664

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
 Frame = +2

Query: 14  SNTAQKIPEKRTLSKD-----TSVTVDLTDDEPPNKVVARNPQPP-VRLVSPQTLMGPQR 175
           ++T+  I E   L+ D     T V V LT  EP   V++ +P PP V    PQT + P  
Sbjct: 213 NSTSAAITEGNELTSDNIFFFTPVLVPLTT-EPTKIVISPSPPPPPVVATPPQTPVDP-- 269

Query: 176 SHFGQGIANSHRKVFIPI 229
                G ++SH+ ++I I
Sbjct: 270 ----PGSSSSHKWIYIGI 283


>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
           4A-2 / eIF-4A-2 similar to eukaryotic translation
           initiation factor 4A GI:19696 from [Nicotiana
           plumbaginifolia]
          Length = 412

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +3

Query: 435 SAPARTRFETFQSRKRYSDILENQ*YQEDSYEEI-ASYQLYAYQE 566
           SAP  T+F+T Q  +R +++L+ Q     SY+E+  S+     QE
Sbjct: 4   SAPEGTQFDTRQFDQRLNEVLDGQDEFFTSYDEVHESFDAMGLQE 48


>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
           similar to SP|O94761 ATP-dependent DNA helicase Q4
           (RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 911

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/55 (25%), Positives = 19/55 (34%)
 Frame = +1

Query: 289 PPGMQRPRTAAPNIGRAQNQIKTNKPNQVHRHPAPMPEIMKQYHPPNWKALPPAP 453
           PP +Q P    P + R      +    +   HP P P        P     PP+P
Sbjct: 25  PPQLQSPAKHVPPVSRKMTSSSSRSKPKAPTHPPPNPSQEAPVPSPYPPPPPPSP 79


>At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3
           (ADO3) E3 ubiquitin ligase SCF complex F-box subunit;
           identical to FKF1 GI:6960305 and Adagio 3 GI:13487072
           from [Arabidopsis thaliana]; contains Pfam profiles
           PF01344: Kelch motif, PF00785: PAC motif and PF00646:
           F-box domain; contains TIGRfam profile TIGR00229: PAS
           domain S-boxidentical to cDNA Adagio 3 (ADO3)
           GI:13487071
          Length = 619

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +2

Query: 50  LSKDTSVTVDLTDDEPPNKVVARNPQPPVRLVSPQTLMGPQRSHFGQGIANS-HRKV 217
           L  DT + +DLT D+P  K +  +  PP RL    ++ G  +     G+ANS H K+
Sbjct: 434 LLSDTFL-LDLTTDKPTWKEIPTSWAPPSRLGHSLSVFGRTKILMFGGLANSGHLKL 489


>At1g22890.1 68414.m02859 expressed protein 
          Length = 73

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 119 NPQPPVRLVSPQTLMGPQRSHFGQG 193
           +P PP R ++P   + P  SH GQG
Sbjct: 48  SPPPPHRSMAPPIFVPPSTSHKGQG 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,939,242
Number of Sequences: 28952
Number of extensions: 416441
Number of successful extensions: 1189
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)