Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0805
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    27   2.2  
SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase |Schizosacc...    26   5.2  
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...    26   6.8  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    26   6.8  
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe...    26   6.8  
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac...    25   9.0  

>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -1

Query: 658 WHC*SPWATEPLTISVCSSAYKGNKKNLKWLRREKNKKIIK 536
           WHC  P  +EP  +  C  A+  +    K  +    K I+K
Sbjct: 838 WHCNQPLFSEPFVLFPCQHAFHRSCMLEKTYKLASEKNILK 878


>SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 71  LRIRRFETESRCTLTDDHEYSSMLTSTHRYIFPIIRYFN 187
           +R R FET ++ T+TD +++ +    T    FP I Y N
Sbjct: 244 IRERDFETFAKLTMTDSNQFHACCLDT----FPPIFYLN 278


>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 620 GEWFRRPWTSAMPGAEPSRWPKV 688
           GE   R   S MPG  P+ WP++
Sbjct: 134 GEEGARYGPSLMPGGNPAAWPRI 156


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/54 (20%), Positives = 22/54 (40%)
 Frame = -1

Query: 679 PAAWLCPWHC*SPWATEPLTISVCSSAYKGNKKNLKWLRREKNKKIIKTASKTP 518
           P   +  +HC   W     T  +C  +  GN+ +   +    N +  + A++ P
Sbjct: 327 PCGHILHFHCLRNWLERQQTCPICRRSVIGNQSSPTGIPASPNVRATQIATQVP 380


>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 396 RLNQILFHPSIETDTVSSSGRSTYIFLLANIH 301
           ++  I FHP     TV+SS ++ +IF L  ++
Sbjct: 235 QIYSIAFHPDSSLLTVTSSTQTVHIFRLKEVY 266


>SPAC1D4.03c |aut12||autophagy associated protein
           Aut12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -1

Query: 583 KNLKWLRREKNKKIIKT 533
           K L+W+RRE+N+  I+T
Sbjct: 493 KILRWIRREENRLFIQT 509


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,944,373
Number of Sequences: 5004
Number of extensions: 56798
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)