Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0805
         (769 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23526-1|AAK95866.1|  252|Caenorhabditis elegans Claudin-like in...    28   8.4  
AF252604-1|AAF67350.1|  252|Caenorhabditis elegans Gas3/PMP22-li...    28   8.4  

>U23526-1|AAK95866.1|  252|Caenorhabditis elegans Claudin-like in
           caenorhabditisprotein 2 protein.
          Length = 252

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -3

Query: 452 YLIQMIKL*MVLL*SCKNIA*TKYSFTPR*KRTQFLVLGAPLTFSCLLTY 303
           YLI      + L+  C +++  K S  P   R+ FLVL A + F CL+ +
Sbjct: 95  YLISQAFAMLSLISFCVSVS-HKESKMPNILRSVFLVLAAVIAFGCLIAF 143


>AF252604-1|AAF67350.1|  252|Caenorhabditis elegans Gas3/PMP22-like
           protein protein.
          Length = 252

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -3

Query: 452 YLIQMIKL*MVLL*SCKNIA*TKYSFTPR*KRTQFLVLGAPLTFSCLLTY 303
           YLI      + L+  C +++  K S  P   R+ FLVL A + F CL+ +
Sbjct: 95  YLISQAFAMLSLISFCVSVS-HKESKMPNILRSVFLVLAAVIAFGCLIAF 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,101,120
Number of Sequences: 27780
Number of extensions: 307872
Number of successful extensions: 585
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)