Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0805
         (769 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   2.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   5.5  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   9.5  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 384 ILFHPSIETDTVSSSGRSTYIFLLANIHLTDYKAILII 271
           +LFH   +T  V +SGR   I LLA + +      L++
Sbjct: 536 LLFHHR-DTPVVRASGRELTIILLAGVLVCYLNTFLLL 572


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 384 ILFHPSIETDTVSSSGRSTYIFLLANIHLTDYKAILII 271
           +LFH   +T  V +SGR   I LLA + +      L++
Sbjct: 626 LLFHHR-DTPVVRASGRELTIILLAGVLVCYLNTFLLL 662


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/44 (22%), Positives = 20/44 (45%)
 Frame = -2

Query: 384 ILFHPSIETDTVSSSGRSTYIFLLANIHLTDYKAILIIRVYKIC 253
           ++ +P+      ++   + Y  LL   HL  +    +I+VY  C
Sbjct: 181 LVANPTANYSASTTLSHAEYSMLLVYFHLQRHMGNFLIQVYGPC 224


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 214 ILNRYYQSYIKITYYWKYI 158
           I +R   + +K+ Y WKYI
Sbjct: 20  IHSRNLTNSLKVIYEWKYI 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,567
Number of Sequences: 438
Number of extensions: 3839
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)