Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0804
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    27   2.1  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    26   6.3  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    26   6.3  
SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|ch...    26   6.3  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    25   8.3  
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz...    25   8.3  
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc...    25   8.3  

>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 374 TPADTSRPTEVNTKPENDLSTLKPTTTIIISTLQPSSVPI 493
           TP  T  PTE  T P   +ST    TT  ++ +  S++P+
Sbjct: 506 TPKSTDTPTEATTSPVK-VSTKNSNTTENLNGINESNMPM 544


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 377 PADTSRPTEVNTKPENDLSTLKPTTTIIISTLQPSS 484
           P  T+  +  NT P N   T KP+T   I+T  P++
Sbjct: 231 PRPTTSASNTNTSPANGAPTNKPSTD--INTTDPAT 264


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 19/71 (26%), Positives = 31/71 (43%)
 Frame = +3

Query: 150 FTWWSSGEPELAPGSDQLLAIGPDNIIEIGKHNVTYGAMIKLAQL*NATESVAETLPVIF 329
           + W+   EPE+    D    I  D    + KHN  YG +I + +L       A+T+P +F
Sbjct: 219 YEWYWRLEPEVTFSCD----ISYDPFYYMDKHNKVYGYVIAIKEL-------AKTVPNLF 267

Query: 330 MTPTLPESVEN 362
                 + + N
Sbjct: 268 RYTVAHQKISN 278


>SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 96  PFRGRGIGSTIWGWITY 146
           P+R RGI  T + W+TY
Sbjct: 33  PYRKRGISRTPYEWLTY 49


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 149 RVSYPSPYSRPDPTTPKR 96
           + SY SPY+RP  TT +R
Sbjct: 354 KASYISPYARPGITTSRR 371


>SPAC4D7.05 |sum1|tif34|translation initiation factor
           eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 302 SCRNVTCNIYDTDITGECREYNTITPADTSRPTEV 406
           SC++ T    D D     + Y T TP +TS  T V
Sbjct: 209 SCKDTTAKAIDVDSFEVIKTYLTDTPLNTSSFTPV 243


>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 488 PIASGLEKLIPRSKNDP 538
           P+ SG EKL  R+KN P
Sbjct: 319 PLRSGFEKLCKRNKNPP 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,918,606
Number of Sequences: 5004
Number of extensions: 60438
Number of successful extensions: 177
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)