BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0804 (724 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 27 2.1 SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 26 6.3 SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch... 26 6.3 SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|ch... 26 6.3 SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 25 8.3 SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz... 25 8.3 SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc... 25 8.3 >SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr 2|||Manual Length = 743 Score = 27.5 bits (58), Expect = 2.1 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = +2 Query: 374 TPADTSRPTEVNTKPENDLSTLKPTTTIIISTLQPSSVPI 493 TP T PTE T P +ST TT ++ + S++P+ Sbjct: 506 TPKSTDTPTEATTSPVK-VSTKNSNTTENLNGINESNMPM 544 >SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizosaccharomyces pombe|chr 1|||Manual Length = 1403 Score = 25.8 bits (54), Expect = 6.3 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = +2 Query: 377 PADTSRPTEVNTKPENDLSTLKPTTTIIISTLQPSS 484 P T+ + NT P N T KP+T I+T P++ Sbjct: 231 PRPTTSASNTNTSPANGAPTNKPSTD--INTTDPAT 264 >SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosaccharomyces pombe|chr 2|||Manual Length = 438 Score = 25.8 bits (54), Expect = 6.3 Identities = 19/71 (26%), Positives = 31/71 (43%) Frame = +3 Query: 150 FTWWSSGEPELAPGSDQLLAIGPDNIIEIGKHNVTYGAMIKLAQL*NATESVAETLPVIF 329 + W+ EPE+ D I D + KHN YG +I + +L A+T+P +F Sbjct: 219 YEWYWRLEPEVTFSCD----ISYDPFYYMDKHNKVYGYVIAIKEL-------AKTVPNLF 267 Query: 330 MTPTLPESVEN 362 + + N Sbjct: 268 RYTVAHQKISN 278 >SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 178 Score = 25.8 bits (54), Expect = 6.3 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = +3 Query: 96 PFRGRGIGSTIWGWITY 146 P+R RGI T + W+TY Sbjct: 33 PYRKRGISRTPYEWLTY 49 >SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr 3|||Manual Length = 736 Score = 25.4 bits (53), Expect = 8.3 Identities = 10/18 (55%), Positives = 13/18 (72%) Frame = -3 Query: 149 RVSYPSPYSRPDPTTPKR 96 + SY SPY+RP TT +R Sbjct: 354 KASYISPYARPGITTSRR 371 >SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schizosaccharomyces pombe|chr 1|||Manual Length = 328 Score = 25.4 bits (53), Expect = 8.3 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = +2 Query: 302 SCRNVTCNIYDTDITGECREYNTITPADTSRPTEV 406 SC++ T D D + Y T TP +TS T V Sbjct: 209 SCKDTTAKAIDVDSFEVIKTYLTDTPLNTSSFTPV 243 >SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Schizosaccharomyces pombe|chr 1|||Manual Length = 611 Score = 25.4 bits (53), Expect = 8.3 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = +2 Query: 488 PIASGLEKLIPRSKNDP 538 P+ SG EKL R+KN P Sbjct: 319 PLRSGFEKLCKRNKNPP 335 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,918,606 Number of Sequences: 5004 Number of extensions: 60438 Number of successful extensions: 177 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 169 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 177 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 339215786 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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