Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0804
         (724 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7844| Best HMM Match : RasGEF (HMM E-Value=0.00058)                 35   0.077
SB_11749| Best HMM Match : UPF0254 (HMM E-Value=0.71)                  32   0.54 
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)                    31   0.72 
SB_5218| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.95 
SB_47342| Best HMM Match : VWA (HMM E-Value=0)                         30   1.7  
SB_25009| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_57662| Best HMM Match : Drf_FH1 (HMM E-Value=5.8)                   29   3.8  
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_33079| Best HMM Match : FYVE (HMM E-Value=1.1e-29)                  28   8.8  
SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24)            28   8.8  

>SB_7844| Best HMM Match : RasGEF (HMM E-Value=0.00058)
          Length = 1299

 Score = 34.7 bits (76), Expect = 0.077
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +2

Query: 305  CRNVTCNIYDTDITGEC-REYNTITPADTSRPTEVNTKPENDLSTLKPTTTIIISTLQPS 481
            C + T +  D   TGEC    +T+   DTS  + V       +ST+K   T ++ST++  
Sbjct: 1044 CFSQTSDASDQPATGECYASTSTVKDGDTSVVSTVKDGDTPVVSTVKDGDTPVVSTVKDG 1103

Query: 482  SVPIAS 499
              P+ S
Sbjct: 1104 DTPVVS 1109


>SB_11749| Best HMM Match : UPF0254 (HMM E-Value=0.71)
          Length = 405

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = +2

Query: 263 NDQTCTTMKCDRISCRNVTCNIYDTDITGECREYNTIT 376
           ND    T KC R  C    CNI  T I G  RE  ++T
Sbjct: 305 NDLEPGTFKCSRKRCTTCNCNIPTTRIIGPNRESYSVT 342


>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 4833

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -2

Query: 525  DRGINFSSPLAIGTDEGCRV-DIIIVVVGFNVDRSFSGLVLTSVGLDVSA 379
            D+   F+S       E  RV D+++ V+  + D   +G V+ S+GLD+ A
Sbjct: 1883 DQPPEFTSASVAHVSENSRVGDVVLTVIAVDADEGSNGDVVYSLGLDIGA 1932


>SB_5218| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +2

Query: 254 IWCNDQTCTTMKCDRISCRNVTCNIYDTDITGECREYNTI 373
           I CN   C T++C+   C    CN    +      + NTI
Sbjct: 191 IQCNTLQCNTIQCNTTQCNTTQCNTIQGNTARNTAQCNTI 230



 Score = 29.5 bits (63), Expect = 2.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 260 CNDQTCTTMKCDRISCRNVTCN 325
           CN   C T++C+ I C    CN
Sbjct: 188 CNTIQCNTLQCNTIQCNTTQCN 209



 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +2

Query: 263 NDQTCTTMKCDRISCRNVTCNIYDTDITGECREYNTITPADTSRPTEVNTKPENDL 430
           N   C T++C+ + C  + CN    + T +C   NTI         + NT   N L
Sbjct: 184 NTAQCNTIQCNTLQCNTIQCNTTQCNTT-QC---NTIQGNTARNTAQCNTIQCNTL 235



 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = +2

Query: 260 CNDQTCTTMKCDRISCRNVTCNIYDTDITGEC 355
           CN   C T +C+   C    CN    + T  C
Sbjct: 262 CNTTECNTAQCNTTQCNTAQCNTTQCNTTQCC 293



 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = +2

Query: 260 CNDQTCTTMKCDRISCRNVTCNIYDTDITGEC 355
           CN   C T +C+   C    CN      T +C
Sbjct: 267 CNTAQCNTTQCNTAQCNTTQCNTTQCCNTTQC 298


>SB_47342| Best HMM Match : VWA (HMM E-Value=0)
          Length = 483

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = +2

Query: 332 DTDITGECREYNT---ITPADTSRPTEVNTKPENDLSTLKPTTTIIISTLQPSSVPIASG 502
           D+ +T E     T   IT   TSRPT ++T      ST + TT    ST+ P+S PI +G
Sbjct: 241 DSQVTRENSPSTTRRPITTIPTSRPTRLSTP-----STRRKTTRRA-STIPPTSRPITTG 294

Query: 503 LE 508
           +E
Sbjct: 295 VE 296


>SB_25009| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 641

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
 Frame = +2

Query: 260 CNDQ---TCTTMKCDRISCRNVTCNIYDTDITGECREYNTITPADTSRPTEVNTKPENDL 430
           CNDQ   TC       +S             T       T+TP  ++  TE  T      
Sbjct: 406 CNDQGMITCPDATTKDVSSTETVSVTSAPTATLTSAPTATVTPTASNAFTETTTVTSTTT 465

Query: 431 STLKPTTTIIISTLQPSSVP 490
            T+ P  T   S++ PSS P
Sbjct: 466 ITVLPQPTSASSSITPSSTP 485


>SB_57662| Best HMM Match : Drf_FH1 (HMM E-Value=5.8)
          Length = 157

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 395 PTEVNTKPENDLSTLKPTTTIIISTLQPSSVPIASGLEKLIPR 523
           PT  +T+PE+  S   PT +  I+    +SVP  S L   +P+
Sbjct: 5   PTARSTRPESVTSPAGPTNSKAITPEYQNSVPGPSSLSAAVPK 47


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -1

Query: 379  GRYCIVFSTLSGNVGVINITGNVSATDSVAFHSCASLIIAPYVT 248
            G YC V +T  G VG   +TG ++           +++ A ++T
Sbjct: 1009 GHYCSVLNTGRGTVGASTVTGAIAGGSVGGLFLIGAIVAAIFIT 1052


>SB_33079| Best HMM Match : FYVE (HMM E-Value=1.1e-29)
          Length = 212

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
 Frame = +2

Query: 254 IWCNDQTCTT-MKCDRISCRNVT----CNIYDTDITGECREYNTITPADTSRPTEVNTKP 418
           +W  D   +T M C +     +     C      + G C     + PA +S+P  V    
Sbjct: 80  VWVPDSEASTCMSCMKTKFTAINRRHHCRKCGAVVCGACSTKKFLLPAQSSKPLRVCNSC 139

Query: 419 ENDLSTLKP 445
            N LS  KP
Sbjct: 140 YNTLSNTKP 148


>SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24)
          Length = 652

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
 Frame = +2

Query: 341 ITGECREYNTITPADTSRPTEVNTKPENDLSTLKPT------TTIIISTLQPSSVPIASG 502
           ITG+  +  T +   T+ PT   +  +  +ST KP        T +++  +P+S+P  +G
Sbjct: 519 ITGQPTQPATTSTTPTTMPTRKPSTAQPSVSTTKPNDVVKTHMTSVVTKPKPTSIPPTTG 578

Query: 503 LEK 511
             K
Sbjct: 579 SPK 581


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,892,844
Number of Sequences: 59808
Number of extensions: 466712
Number of successful extensions: 1441
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1421
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)