Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0804
         (724 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.7  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   8.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.9  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 649 LFFNRMDTMIY*LSQRTTG 705
           L  NR+DT+IY + +R  G
Sbjct: 549 LLRNRLDTLIYPIIRRKLG 567


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 656 KNKDLDKEILEFDQLQRC*SLLPKLSVPITVDDKTASNS 540
           K K L + I   D L++     P L  PIT D+K   N+
Sbjct: 1   KEKHLTQRINSCDLLKKRNENDPFLKRPITGDEKWVVNN 39


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = +3

Query: 135 WITYPFTWWS 164
           ++TY + WWS
Sbjct: 519 YLTYEYPWWS 528


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = +3

Query: 135 WITYPFTWWS 164
           ++TY + WWS
Sbjct: 572 YLTYEYPWWS 581


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,792
Number of Sequences: 438
Number of extensions: 4233
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)