Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0804
         (724 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03500.1 68417.m00477 ankyrin repeat family protein contains ...    32   0.44 
At4g35500.2 68417.m05045 protein kinase family protein contains ...    30   1.4  
At4g35500.1 68417.m05044 protein kinase family protein contains ...    30   1.4  
At2g17530.1 68415.m02028 protein kinase family protein identical...    30   1.8  
At1g56020.1 68414.m06431 expressed protein                             28   5.5  
At1g63170.1 68414.m07139 zinc finger (C3HC4-type RING finger) fa...    28   7.2  
At1g12380.1 68414.m01431 expressed protein                             27   9.5  

>At4g03500.1 68417.m00477 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 652

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = -2

Query: 465 DIIIVVVGFNVDRSFSGLVLTSVGLDVSAGVIVLYSLHSPVMSVS*I-LQVTFLQLIL 295
           D+ I++  FN+   F GL LTS+ +   AG  V  S H P++    + + + FL ++L
Sbjct: 549 DLSIILKAFNIALPFLGLALTSMSIAFMAGTYVAVS-HLPLLGYFVLGIGIIFLLVLL 605


>At4g35500.2 68417.m05045 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 439

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 431 STLKPTTTIIISTLQPSSVPIASGLEKLIPRSKND 535
           S LKP   ++ ST+ P+  P+ SGL  L+ + + +
Sbjct: 169 SDLKPENILLCSTIDPAKDPVRSGLTPLLEKPEGN 203


>At4g35500.1 68417.m05044 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 438

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 431 STLKPTTTIIISTLQPSSVPIASGLEKLIPRSKND 535
           S LKP   ++ ST+ P+  P+ SGL  L+ + + +
Sbjct: 168 SDLKPENILLCSTIDPAKDPVRSGLTPLLEKPEGN 202


>At2g17530.1 68415.m02028 protein kinase family protein identical to
           SRPK2 [Arabidopsis thaliana] gi|9843645|emb|CAC03676;
           contains protein kinase domain, Pfam:PF00069
          Length = 440

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 431 STLKPTTTIIISTLQPSSVPIASGLEKLIPRSKND 535
           S LKP   ++ ST+ P+  PI SGL  ++ + + +
Sbjct: 168 SDLKPENILLCSTIDPAKDPIRSGLTPILEKPEGN 202


>At1g56020.1 68414.m06431 expressed protein
          Length = 398

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
 Frame = -2

Query: 117 RSHDPET----GHVQSSVCLDNRALSTTRELPRV 28
           R+H P T    G   SS C+++R L+ T + PR+
Sbjct: 259 RNHPPSTPSVDGSSSSSACIESRGLTVTADSPRL 292


>At1g63170.1 68414.m07139 zinc finger (C3HC4-type RING finger)
           family protein low similarity to SP|Q06003 Goliath
           protein (G1 protein) {Drosophila melanogaster}; contains
           Pfam profile PF00097: Zinc finger, C3HC4 type (RING
           finger)
          Length = 381

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/28 (57%), Positives = 17/28 (60%)
 Frame = +3

Query: 120 STIWGWITYPFTWWSSGEPELAPGSDQL 203
           S IW W+   F W SSG  ELA GS QL
Sbjct: 194 SFIW-WVI-GFYWVSSGGQELAQGSPQL 219


>At1g12380.1 68414.m01431 expressed protein
          Length = 793

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = +2

Query: 347 GECREYNTITPADTSRPTEVNTKPENDLSTLKPTTTIIISTLQPSSV--PIASGLEKLIP 520
           G C  +N++TP  T  P+  ++         K  ++  ++T  PS +  P   G   + P
Sbjct: 111 GTCPNFNSVTPISTITPSPTSSSSSPQTHHRKRNSSGAVTTAIPSRLNPPPIGGSYHVTP 170

Query: 521 RSKNDP 538
            +  DP
Sbjct: 171 ITVVDP 176


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,108,609
Number of Sequences: 28952
Number of extensions: 316362
Number of successful extensions: 835
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)