Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0803
         (761 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g30600.2 68415.m03729 BTB/POZ domain-containing protein conta...    35   0.068
At2g30600.1 68415.m03728 BTB/POZ domain-containing protein conta...    35   0.068
At4g08455.1 68417.m01394 BTB/POZ domain-containing protein Inter...    33   0.16 
At1g01640.2 68414.m00082 speckle-type POZ protein-related contai...    32   0.48 
At1g01640.1 68414.m00081 speckle-type POZ protein-related contai...    32   0.48 
At5g13060.1 68418.m01497 armadillo/beta-catenin repeat family pr...    28   5.9  

>At2g30600.2 68415.m03729 BTB/POZ domain-containing protein contains
           Pfam PF00651: BTB/POZ domain; contains Interpro
           IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
           (GI:1841872) [Dictyostelium discoideum]
          Length = 809

 Score = 34.7 bits (76), Expect = 0.068
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
 Frame = +1

Query: 256 SVCSPYFQEMFK--MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVK 393
           S+ S  F +MF   M+ +    ++L DVS  A + ++ FMY GE+N++
Sbjct: 372 SLWSVAFAKMFTNGMSESHSSTIYLTDVSPEAFKAMMNFMYSGELNME 419



 Score = 33.9 bits (74), Expect = 0.12
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +1

Query: 286 FKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGLTGNQN 465
           F +  +   ++ L+ VS+  L  LLQ++Y G   + + ELA     + + +V  L   Q 
Sbjct: 237 FPLRSSDGDVIQLRGVSYPILHALLQYIYTGRTQILESELAPLRDLSSKFEVMSLV-RQC 295

Query: 466 EE 471
           EE
Sbjct: 296 EE 297


>At2g30600.1 68415.m03728 BTB/POZ domain-containing protein contains
           Pfam PF00651: BTB/POZ domain; contains Interpro
           IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
           (GI:1841872) [Dictyostelium discoideum]
          Length = 809

 Score = 34.7 bits (76), Expect = 0.068
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
 Frame = +1

Query: 256 SVCSPYFQEMFK--MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVK 393
           S+ S  F +MF   M+ +    ++L DVS  A + ++ FMY GE+N++
Sbjct: 372 SLWSVAFAKMFTNGMSESHSSTIYLTDVSPEAFKAMMNFMYSGELNME 419



 Score = 33.9 bits (74), Expect = 0.12
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +1

Query: 286 FKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGLTGNQN 465
           F +  +   ++ L+ VS+  L  LLQ++Y G   + + ELA     + + +V  L   Q 
Sbjct: 237 FPLRSSDGDVIQLRGVSYPILHALLQYIYTGRTQILESELAPLRDLSSKFEVMSLV-RQC 295

Query: 466 EE 471
           EE
Sbjct: 296 EE 297


>At4g08455.1 68417.m01394 BTB/POZ domain-containing protein Interpro
           IPR000210/ PS50097: BTBB/POZ domain; similar to POZ 56
           protein (GI:17483747) [Mus musculus]
          Length = 243

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +1

Query: 265 SPYFQEMFK--MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQ 438
           SP F+ M +  M  +    + + DVS+ ALR  + ++Y  E  + ++     +  +E+ Q
Sbjct: 91  SPVFKAMLENEMEESLSGTIKISDVSYDALRTFVYYLYTAEACLDEQMACDLLVMSEKYQ 150

Query: 439 VKGL 450
           VK L
Sbjct: 151 VKHL 154


>At1g01640.2 68414.m00082 speckle-type POZ protein-related contains
           Pfam profile:PF00651 BTB/POZ domain; similar to
           Speckle-type POZ protein (SP:O43791) [Homo sapiens]
          Length = 207

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 316 VFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGL 450
           + L D+SH  L+ LL+F+Y G +     +  S    A++  +  L
Sbjct: 68  ITLPDLSHDELKSLLEFLYSGNLKAPYNQYRSLYLAADKYDISYL 112


>At1g01640.1 68414.m00081 speckle-type POZ protein-related contains
           Pfam profile:PF00651 BTB/POZ domain; similar to
           Speckle-type POZ protein (SP:O43791) [Homo sapiens]
          Length = 207

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 316 VFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGL 450
           + L D+SH  L+ LL+F+Y G +     +  S    A++  +  L
Sbjct: 68  ITLPDLSHDELKSLLEFLYSGNLKAPYNQYRSLYLAADKYDISYL 112


>At5g13060.1 68418.m01497 armadillo/beta-catenin repeat family
           protein / BTB/POZ domain-containing protein contains
           armadillo/beta-catenin-like repeats, Pfam:PF00514 and a
           BTB/POZ domain, Pfam:PF00651
          Length = 709

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/67 (20%), Positives = 32/67 (47%)
 Frame = +1

Query: 250 SSSVCSPYFQEMFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAE 429
           SS +    F  ++K    Q+  V + ++       +++F+Y G +N+ +      +  A+
Sbjct: 561 SSDIFRAMFDGLYKERNAQN--VEIPNIRWEVFELMMKFIYSGRINIAKHLAKDLLVAAD 618

Query: 430 QLQVKGL 450
           Q  ++GL
Sbjct: 619 QYLLEGL 625


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,655,830
Number of Sequences: 28952
Number of extensions: 301323
Number of successful extensions: 777
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)