Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0802
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    28   1.2  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    28   1.6  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    26   6.6  
SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr ...    26   6.6  
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    25   8.8  
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    25   8.8  

>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +2

Query: 77  DLQKTGDRYLRALKPLLTNSLYDDAQQRTLKFVNGEGLEIQEKLISKD 220
           +L+ T   Y+  +   LTN  ++     TL +  G+ + ++ +  SKD
Sbjct: 91  ELEATNQSYITVIDDTLTNITFESTDNDTLTYFEGDNILVKFEGKSKD 138


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 334 KPEYNDQLIRATNLLISAVRFMLSLREHILE 426
           +P+YND+ +   NL++++V  ML L+    E
Sbjct: 265 QPQYNDKFVTMFNLVMTSVNSMLPLQTDFRE 295


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1225

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +2

Query: 155  QRTLKFVNGEGLEIQEKLISKDKMNKNTSYISDFGLTSICGIELPYRLTSIPI*C--FKM 328
            Q T K ++G+     + ++S+D ++K  +   +        I + +RLT +P+     +M
Sbjct: 973  QCTFKLLDGDKEVGSKTMLSRDLISKGATKPLEIAFPDGASILVAFRLTPVPVKLEEVEM 1032

Query: 329  ISNLNIMT 352
              N+  MT
Sbjct: 1033 YENMGEMT 1040


>SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +2

Query: 446 MRKRVILRYLEQLLDYYLKLSLVWCIFIQSISIRYE----SICWTIWS 577
           + KRV++      + ++ KL  VW   +QSI+ ++     ++  T+WS
Sbjct: 254 LEKRVLIPSRTMPISFFPKLKNVWLPLLQSIASKHSFFLPALFTTLWS 301


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +2

Query: 68  PIPDLQKTGDRYLRALKPLLTNSLYDDAQQRTLKFVNGE 184
           P+P L KTGD+       LL N ++D   ++T K  NGE
Sbjct: 147 PMPRLMKTGDK--EEQFALLLNKIWD---EQTNKHKNGE 180


>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = +3

Query: 546 DMSQFVGLFGATRLPQIGKDKLFRDPKSKHVLVQRRGRFYAFDVLDKDGNLLSP 707
           DMS  V       L  I +   F  P + H++       Y   VLD+ GNL  P
Sbjct: 386 DMSPLVLFLKGLGLKNILQFPFFVRPPTVHLMAALED-LYLLGVLDESGNLTDP 438


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,983,788
Number of Sequences: 5004
Number of extensions: 61928
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)