Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0801
(724 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P26373 Cluster: 60S ribosomal protein L13; n=111; Eukar... 134 2e-30
UniRef50_Q9FF90 Cluster: 60S ribosomal protein L13-3; n=27; Viri... 98 2e-19
UniRef50_UPI0000D563A2 Cluster: PREDICTED: similar to 60S riboso... 95 1e-18
UniRef50_Q4PAD9 Cluster: 60S ribosomal protein L13; n=2; Basidio... 90 4e-17
UniRef50_A2EYN3 Cluster: 60S ribosomal protein L13; n=6; Trichom... 81 3e-14
UniRef50_A3FQ93 Cluster: 60S ribosomal protein L13, putative; n=... 79 8e-14
UniRef50_A1D9H8 Cluster: 60S ribosomal protein L13; n=26; Fungi/... 78 3e-13
UniRef50_Q4X4D3 Cluster: 60S ribosomal protein L13, putative; n=... 72 1e-11
UniRef50_O59931 Cluster: 60S ribosomal protein L13; n=5; Ascomyc... 70 5e-11
UniRef50_Q57V55 Cluster: 60S ribosomal protein L13, putative; n=... 70 7e-11
UniRef50_A0CPH3 Cluster: 60S ribosomal protein L13; n=9; Oligohy... 70 7e-11
UniRef50_Q9AW85 Cluster: 60S ribosomal protein L13; n=1; Guillar... 60 5e-08
UniRef50_O15616 Cluster: 60S ribosomal protein L13; n=3; Entamoe... 60 7e-08
UniRef50_O14377 Cluster: Putative uncharacterized protein; n=1; ... 60 7e-08
UniRef50_UPI0000DC2213 Cluster: UPI0000DC2213 related cluster; n... 58 3e-07
UniRef50_Q4N9B5 Cluster: 60S ribosomal protein L13e, putative; n... 55 2e-06
UniRef50_UPI00005A0D5A Cluster: PREDICTED: similar to ribosomal ... 54 4e-06
UniRef50_Q8SSC1 Cluster: 60S RIBOSOMAL PROTEIN L13; n=1; Encepha... 50 4e-05
UniRef50_Q018B3 Cluster: Chromosome 05 contig 1, DNA sequence; n... 39 0.11
UniRef50_A2YRI3 Cluster: 60S ribosomal protein L13; n=2; Oryza s... 39 0.14
UniRef50_Q6LAB9 Cluster: 60S ribosomal protein L13; n=1; Arabido... 35 1.8
>UniRef50_P26373 Cluster: 60S ribosomal protein L13; n=111;
Eukaryota|Rep: 60S ribosomal protein L13 - Homo sapiens
(Human)
Length = 211
Score = 134 bits (325), Expect = 2e-30
Identities = 82/206 (39%), Positives = 101/206 (49%)
Frame = +2
Query: 26 NNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVR 205
N M+ HFHKDWQR V TWFNQPAR+ RR++ R +RPIVRCPTVR
Sbjct: 6 NGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVR 65
Query: 206 YHTKVRAGRGFTLREIRAQDXTQYXPERFGXL*IXXDAKXLLKSXXNPCFXXXXVXSACF 385
YHTKVRAGRGF+L E+R + G +S S
Sbjct: 66 YHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLI 125
Query: 386 XVXPKGKXXLKGGXXXXXXXLXTQLRGPLMPVQXPAPKSVADLSLKMKRTSKLINTLRGA 565
K KG L TQL GP+MPV+ K A + + ++ K +LR A
Sbjct: 126 LFPRKPSAPKKGDSSAEELKLATQLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMA 185
Query: 566 RSIAKLVGIRAKRLXDAAENPDDVTK 643
R+ A+L GIRAKR +AAE DV K
Sbjct: 186 RANARLFGIRAKRAKEAAE--QDVEK 209
>UniRef50_Q9FF90 Cluster: 60S ribosomal protein L13-3; n=27;
Viridiplantae|Rep: 60S ribosomal protein L13-3 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 206
Score = 97.9 bits (233), Expect = 2e-19
Identities = 64/201 (31%), Positives = 92/201 (45%), Gaps = 2/201 (0%)
Frame = +2
Query: 20 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 199
K NN+IP+ HF K WQ +VKTWFNQPAR+ RR+ R LRP+V T
Sbjct: 2 KHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQT 61
Query: 200 VRYHTKVRAGRGFTLREIRAQDXTQYXPERFGXL*IXXDAKXLLKSXXNPCFXXXXVXSA 379
++Y+ KVRAG+GFTL E++ + G + + K A
Sbjct: 62 LKYNMKVRAGKGFTLEELKVAGIPKKLAPTIG-ISVDHRRKNRSLEGLQSNVQRLKTYKA 120
Query: 380 CFXVXPKGKXXLKGGXXXXXXXL-XTQLRGPLMPV-QXPAPKSVADLSLKMKRTSKLINT 553
V P+ +K G TQ++G MP+ A + L+ +K K +
Sbjct: 121 KLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLK-AFKAYDK 179
Query: 554 LRGARSIAKLVGIRAKRLXDA 616
+R R+ A+ G RAKR +A
Sbjct: 180 IRLERTNARHAGARAKRAAEA 200
>UniRef50_UPI0000D563A2 Cluster: PREDICTED: similar to 60S ribosomal
protein L13; n=1; Tribolium castaneum|Rep: PREDICTED:
similar to 60S ribosomal protein L13 - Tribolium
castaneum
Length = 198
Score = 95.5 bits (227), Expect = 1e-18
Identities = 45/94 (47%), Positives = 56/94 (59%)
Frame = +2
Query: 14 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRC 193
M + NNMIPNGHFHK WQ+ VK WFNQP ++ RRK R LRP+V C
Sbjct: 1 MVRHNNMIPNGHFHKKWQQKVKLWFNQPMKKLRRKALR-AKKSRQLAPKPTELLRPLVHC 59
Query: 194 PTVRYHTKVRAGRGFTLREIRAQDXTQYXPERFG 295
P+ RY +KVRAGRGFT +E++ + FG
Sbjct: 60 PSERYKSKVRAGRGFTFQELKQAGMSDKYARSFG 93
>UniRef50_Q4PAD9 Cluster: 60S ribosomal protein L13; n=2;
Basidiomycota|Rep: 60S ribosomal protein L13 - Ustilago
maydis (Smut fungus)
Length = 209
Score = 90.2 bits (214), Expect = 4e-17
Identities = 40/80 (50%), Positives = 52/80 (65%)
Frame = +2
Query: 20 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 199
K NN++ N HF KDWQR VK WF+QP + RR+ R LRP VRCPT
Sbjct: 4 KHNNILHNNHFRKDWQRRVKVWFDQPGAKKRRRTAR-EAKAAKLGLRPVQLLRPAVRCPT 62
Query: 200 VRYHTKVRAGRGFTLREIRA 259
+RY+TK+R+GRGFT+ E++A
Sbjct: 63 LRYNTKIRSGRGFTIEEVKA 82
>UniRef50_A2EYN3 Cluster: 60S ribosomal protein L13; n=6;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L13
- Trichomonas vaginalis G3
Length = 210
Score = 81.0 bits (191), Expect = 3e-14
Identities = 40/84 (47%), Positives = 48/84 (57%)
Frame = +2
Query: 8 VKMGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIV 187
++M NN IPN H K W VKT+F+ PAR RR+ R LRPIV
Sbjct: 20 LEMVAKNNQIPNDHLRKYWYHRVKTYFDDPARAQRRRNARNLRAKKIAPRPAEGPLRPIV 79
Query: 188 RCPTVRYHTKVRAGRGFTLREIRA 259
RCPTVRY+ K R GRGFT +E+ A
Sbjct: 80 RCPTVRYNMKTRLGRGFTPKELVA 103
>UniRef50_A3FQ93 Cluster: 60S ribosomal protein L13, putative; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L13, putative
- Cryptosporidium parvum Iowa II
Length = 207
Score = 79.4 bits (187), Expect = 8e-14
Identities = 37/78 (47%), Positives = 49/78 (62%)
Frame = +2
Query: 26 NNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVR 205
NN+IPN H+HK+++R++KTW+NQP R+ R+ R LRPIV PT R
Sbjct: 4 NNVIPNVHYHKNYKRWIKTWYNQPGRKQSRRIAR-QKAVAEAGFRPVGMLRPIVHPPTQR 62
Query: 206 YHTKVRAGRGFTLREIRA 259
Y+ K R GRGFTL E+ A
Sbjct: 63 YNMKTRLGRGFTLEELSA 80
>UniRef50_A1D9H8 Cluster: 60S ribosomal protein L13; n=26;
Fungi/Metazoa group|Rep: 60S ribosomal protein L13 -
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 243
Score = 77.8 bits (183), Expect = 3e-13
Identities = 34/69 (49%), Positives = 47/69 (68%)
Frame = +2
Query: 50 FHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAG 229
FHKDWQR V+ F+QP R++RR++ R+ LRP+VRCPTV+Y+ +VR G
Sbjct: 31 FHKDWQRRVRVHFDQPGRKHRRREARLAKAAAVAPRPVDK-LRPVVRCPTVKYNRRVRVG 89
Query: 230 RGFTLREIR 256
RGFTL E++
Sbjct: 90 RGFTLAELK 98
>UniRef50_Q4X4D3 Cluster: 60S ribosomal protein L13, putative; n=5;
Plasmodium|Rep: 60S ribosomal protein L13, putative -
Plasmodium chabaudi
Length = 215
Score = 72.1 bits (169), Expect = 1e-11
Identities = 36/92 (39%), Positives = 49/92 (53%)
Frame = +2
Query: 26 NNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVR 205
NN++PN H HK WQR+V+ FN+ +R +R+ R L P+V CPT R
Sbjct: 5 NNVLPNVHLHKWWQRYVRVDFNKNIKRKQRRLLR-EKRRKQNGGTPIEKLHPVVHCPTQR 63
Query: 206 YHTKVRAGRGFTLREIRAQDXTQYXPERFGXL 301
Y+ K R G+GFTL EI+A T G +
Sbjct: 64 YNYKTRLGKGFTLEEIKAVKLTPSAARSIGII 95
>UniRef50_O59931 Cluster: 60S ribosomal protein L13; n=5;
Ascomycota|Rep: 60S ribosomal protein L13 - Candida
albicans (Yeast)
Length = 202
Score = 70.1 bits (164), Expect = 5e-11
Identities = 33/73 (45%), Positives = 45/73 (61%)
Frame = +2
Query: 41 NGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKV 220
N HF K WQ V+ F+Q ++ R+Q+R+ LRP+VR PTV+Y+ KV
Sbjct: 11 NNHFRKHWQERVRVHFDQAGKKASRRQSRLRKAAKIAPRPIDA-LRPVVRAPTVKYNRKV 69
Query: 221 RAGRGFTLREIRA 259
RAGRGFTL E++A
Sbjct: 70 RAGRGFTLAELKA 82
>UniRef50_Q57V55 Cluster: 60S ribosomal protein L13, putative; n=7;
Trypanosomatidae|Rep: 60S ribosomal protein L13,
putative - Trypanosoma brucei
Length = 229
Score = 69.7 bits (163), Expect = 7e-11
Identities = 39/88 (44%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Frame = +2
Query: 14 MGKGNNMIPNGHFHKDWQRF------VKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXL 175
M KGNN IP+ H K W VK +FNQPA++ RR++ R+ L
Sbjct: 12 MPKGNNAIPHVHQRKHWNPCSSQKGNVKVFFNQPAQKQRRRRLRLLKAKKIFPRPLKA-L 70
Query: 176 RPIVRCPTVRYHTKVRAGRGFTLREIRA 259
RP V CPTVRY+ K R GRGF+L E++A
Sbjct: 71 RPQVNCPTVRYNMKRRLGRGFSLEELKA 98
>UniRef50_A0CPH3 Cluster: 60S ribosomal protein L13; n=9;
Oligohymenophorea|Rep: 60S ribosomal protein L13 -
Paramecium tetraurelia
Length = 208
Score = 69.7 bits (163), Expect = 7e-11
Identities = 33/79 (41%), Positives = 47/79 (59%)
Frame = +2
Query: 20 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 199
K N +PN H K W RFVKT++NQPA + RR+Q R LRP+VR T
Sbjct: 2 KHNQQLPNAHMRKHWTRFVKTFYNQPAAK-RRRQLRRRAQALSASPRPVELLRPVVRGQT 60
Query: 200 VRYHTKVRAGRGFTLREIR 256
++Y++ + GRGF+L E++
Sbjct: 61 IKYNSVQKLGRGFSLIELK 79
>UniRef50_Q9AW85 Cluster: 60S ribosomal protein L13; n=1; Guillardia
theta|Rep: 60S ribosomal protein L13 - Guillardia theta
(Cryptomonas phi)
Length = 127
Score = 60.1 bits (139), Expect = 5e-08
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +2
Query: 44 GHFHKDWQRFVKTWFNQPARRY-RRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKV 220
GHF K W+ V T FNQP + RRK + L+P+V+CPT ++TK+
Sbjct: 10 GHFRKKWKNLVITNFNQPILKIKRRKIRKNKKKNFLKKAIFYKKLKPLVKCPTRMHNTKI 69
Query: 221 RAGRGFTLREIR 256
+ GRGF+++EI+
Sbjct: 70 KLGRGFSIQEIK 81
>UniRef50_O15616 Cluster: 60S ribosomal protein L13; n=3; Entamoeba
histolytica|Rep: 60S ribosomal protein L13 - Entamoeba
histolytica
Length = 138
Score = 59.7 bits (138), Expect = 7e-08
Identities = 29/70 (41%), Positives = 39/70 (55%)
Frame = +2
Query: 50 FHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAG 229
F KDW+ V TW QP R+ RR Q R+ L+P V C R++ K+R G
Sbjct: 12 FGKDWRSKVHTWVQQPFRKIRRHQTRVEKAKSVFPATIKS-LKPSVHCMNQRFNYKLRLG 70
Query: 230 RGFTLREIRA 259
RGF+L+E+RA
Sbjct: 71 RGFSLKELRA 80
>UniRef50_O14377 Cluster: Putative uncharacterized protein; n=1;
Schizosaccharomyces pombe|Rep: Putative uncharacterized
protein - Schizosaccharomyces pombe (Fission yeast)
Length = 70
Score = 59.7 bits (138), Expect = 7e-08
Identities = 21/28 (75%), Positives = 25/28 (89%)
Frame = +2
Query: 35 IPNGHFHKDWQRFVKTWFNQPARRYRRK 118
+PN HFHKDWQR+VKTWFNQP R+ RR+
Sbjct: 12 LPNAHFHKDWQRYVKTWFNQPGRKLRRQ 39
>UniRef50_UPI0000DC2213 Cluster: UPI0000DC2213 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC2213 UniRef100 entry -
Rattus norvegicus
Length = 173
Score = 57.6 bits (133), Expect = 3e-07
Identities = 24/28 (85%), Positives = 26/28 (92%)
Frame = +2
Query: 173 LRPIVRCPTVRYHTKVRAGRGFTLREIR 256
+RPIVRCPTVRYHTKVR GRGF+L EIR
Sbjct: 13 IRPIVRCPTVRYHTKVRGGRGFSLEEIR 40
>UniRef50_Q4N9B5 Cluster: 60S ribosomal protein L13e, putative; n=4;
Piroplasmida|Rep: 60S ribosomal protein L13e, putative -
Theileria parva
Length = 205
Score = 54.8 bits (126), Expect = 2e-06
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 14 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRC 193
M K NNM+ + H K RFVK NQ ++ RR+ R LRP+V
Sbjct: 1 MVKHNNMLSDVHRVKCSHRFVKPVLNQAGKKKRRRLAR-QRKAAASGLTPTGYLRPLVHM 59
Query: 194 PTVRYHTKVRAGRGFTLREIR 256
P+ RY+ K+R GRGFTL+E++
Sbjct: 60 PSRRYNYKLRFGRGFTLQELK 80
>UniRef50_UPI00005A0D5A Cluster: PREDICTED: similar to ribosomal
protein L13 isoform 4; n=1; Canis lupus familiaris|Rep:
PREDICTED: similar to ribosomal protein L13 isoform 4 -
Canis familiaris
Length = 102
Score = 54.0 bits (124), Expect = 4e-06
Identities = 22/30 (73%), Positives = 23/30 (76%)
Frame = +2
Query: 26 NNMIPNGHFHKDWQRFVKTWFNQPARRYRR 115
N MI HFHKDWQR V TWFNQPAR+ RR
Sbjct: 6 NGMILKPHFHKDWQRRVATWFNQPARKIRR 35
>UniRef50_Q8SSC1 Cluster: 60S RIBOSOMAL PROTEIN L13; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L13
- Encephalitozoon cuniculi
Length = 163
Score = 50.4 bits (115), Expect = 4e-05
Identities = 27/77 (35%), Positives = 36/77 (46%)
Frame = +2
Query: 20 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 199
KGN+ +PN HF K + + P + R + LRPIVRCPT
Sbjct: 2 KGNHALPNNHFRKTSLKI--RIHHDPETKARVMAEKKLRKAKALFPMPLKKLRPIVRCPT 59
Query: 200 VRYHTKVRAGRGFTLRE 250
++Y+ R GRGFT E
Sbjct: 60 IKYNRNERLGRGFTAAE 76
>UniRef50_Q018B3 Cluster: Chromosome 05 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 05 contig 1, DNA
sequence - Ostreococcus tauri
Length = 527
Score = 39.1 bits (87), Expect = 0.11
Identities = 19/33 (57%), Positives = 20/33 (60%)
Frame = -2
Query: 249 SRRVNPLPARTLVWYRTVGHRTIGRNGPAAGRG 151
S V P P R L YR VG TIGR+ PA GRG
Sbjct: 411 SSSVKPRPRRVLKLYRCVGGCTIGRSAPATGRG 443
>UniRef50_A2YRI3 Cluster: 60S ribosomal protein L13; n=2; Oryza
sativa|Rep: 60S ribosomal protein L13 - Oryza sativa
subsp. indica (Rice)
Length = 138
Score = 38.7 bits (86), Expect = 0.14
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = +2
Query: 179 PIVRCPTVRYHTKVRAGRGFTLREIR 256
PIV+C T++Y+ K RAGRGF L E++
Sbjct: 47 PIVQCQTLKYNMKSRAGRGFILEELK 72
>UniRef50_Q6LAB9 Cluster: 60S ribosomal protein L13; n=1;
Arabidopsis thaliana|Rep: 60S ribosomal protein L13 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 87
Score = 35.1 bits (77), Expect = 1.8
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +2
Query: 173 LRPIVRCPTVRYHTKVRAGRGFTLREIRA 259
LRP+V T++Y+ KV +GFTL E++A
Sbjct: 52 LRPVVHGQTLKYNMKVSTXKGFTLEELKA 80
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 549,111,352
Number of Sequences: 1657284
Number of extensions: 8666596
Number of successful extensions: 19033
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 18706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19013
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58677691418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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