Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0801
         (724 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880...   105   4e-23
06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86...   104   8e-23
01_06_1481 - 37675793-37677325                                         28   8.6  

>03_05_0108 -
           20887146-20887370,20887460-20887618,20887930-20888063,
           20888597-20888705
          Length = 208

 Score =  105 bits (252), Expect = 4e-23
 Identities = 68/203 (33%), Positives = 94/203 (46%), Gaps = 2/203 (0%)
 Frame = +2

Query: 14  MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRC 193
           M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+  R               LRPIV+C
Sbjct: 1   MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60

Query: 194 PTVRYHTKVRAGRGFTLREIRAQDXTQYXPERFGXL*IXXDAKXLLKSXXNPCFXXXXVX 373
            T++Y+ K RAGRGFTL E++A    +      G + +    K                 
Sbjct: 61  QTLKYNMKSRAGRGFTLEELKAAGIPKKYAPTIG-ISVDHRRKNRSLEGLQANVQRLKTY 119

Query: 374 SACFXVXPKGKXXLKGG-XXXXXXXLXTQLRGPLMPVQXPAPKSVADLSLKMK-RTSKLI 547
            A   + P+    +K G          TQ++G  MP+     +SV  + +  + +  K  
Sbjct: 120 KAKLVIFPRRARKVKAGDSTAEELATATQVQGDYMPIARGEKRSVEVVKVTDEMKAFKAY 179

Query: 548 NTLRGARSIAKLVGIRAKRLXDA 616
             LR  R   + VG R KR  +A
Sbjct: 180 AKLRVERMNQRHVGARQKRAAEA 202


>06_01_0110 -
           866728-866952,867035-867193,867315-867448,868225-868333
          Length = 208

 Score =  104 bits (249), Expect = 8e-23
 Identities = 67/203 (33%), Positives = 93/203 (45%), Gaps = 2/203 (0%)
 Frame = +2

Query: 14  MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRC 193
           M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+  R               LRPIV+C
Sbjct: 1   MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60

Query: 194 PTVRYHTKVRAGRGFTLREIRAQDXTQYXPERFGXL*IXXDAKXLLKSXXNPCFXXXXVX 373
            T++Y+ K RAGRGFTL E++A    +      G + +    K                 
Sbjct: 61  QTLKYNMKSRAGRGFTLEELKAAGIPKKFAPTIG-ISVDHRRKNRSLEGLQANVQRLKTY 119

Query: 374 SACFXVXPKGKXXLKGG-XXXXXXXLXTQLRGPLMPVQXPAPKSVADLSL-KMKRTSKLI 547
            A   + P+    +K G          TQ++G  MP+     +SV  + +    +  K  
Sbjct: 120 KAKLVIFPRRARKVKAGDSTPEELATATQVQGDYMPITRGEKRSVEVVKVTDDMKAFKAY 179

Query: 548 NTLRGARSIAKLVGIRAKRLXDA 616
             LR  R   + +G R KR  +A
Sbjct: 180 AKLRVERMNQRHIGARQKRAAEA 202


>01_06_1481 - 37675793-37677325
          Length = 510

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 648 GAFVTSSGFSAASXNLLARIP 586
           GAFVT  G+++AS  + AR+P
Sbjct: 365 GAFVTHCGWNSASEGITARVP 385


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,944,333
Number of Sequences: 37544
Number of extensions: 244823
Number of successful extensions: 512
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)