Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0801
         (724 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)             113   1e-25
SB_31511| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_29407| Best HMM Match : TP2 (HMM E-Value=0.21)                      28   6.7  

>SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)
          Length = 600

 Score =  113 bits (272), Expect = 1e-25
 Identities = 67/192 (34%), Positives = 88/192 (45%), Gaps = 1/192 (0%)
 Frame = +2

Query: 20  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 199
           K NN+IPNGHFHKDWQR+VKTWF+QP R+ RR+  R               LRPIVRCPT
Sbjct: 4   KRNNIIPNGHFHKDWQRYVKTWFDQPGRKKRRRVARQIKAAKIAPRPVAGSLRPIVRCPT 63

Query: 200 VRYHTKVRAGRGFTLREIRAQDXTQYXPERFGXL*IXXDAKXLLKSXXNPCFXXXXVXSA 379
            +Y+TKVRAGRGFTL E++A    +      G            +S            S 
Sbjct: 64  FKYNTKVRAGRGFTLDELKAAGIPRKVAPTIGIAVDHRRKNRSAESLQANVQRLKEYKSK 123

Query: 380 CFXVXPKGKXXLKGGXXXXXXXLXTQLRGPLMPV-QXPAPKSVADLSLKMKRTSKLINTL 556
                 K     +G           QL+GP+MP+ Q   P     ++   K+++      
Sbjct: 124 LIVFPRKANKPKQGDSEAADLANAVQLQGPVMPIPQESVPIKARPITEDEKKSASSRQCE 183

Query: 557 RGARSIAKLVGI 592
                  KLVG+
Sbjct: 184 SSGEVKTKLVGL 195


>SB_31511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 372

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 488 PAPKSVADLSLKMKRTSKLINTLRGARSIAKLVGIRAKRL 607
           P PK   + +  MKRTSK      G+R   K  G++ +RL
Sbjct: 250 PPPKDKPEAAPSMKRTSKTNELYMGSRDWLKRHGLKGRRL 289


>SB_29407| Best HMM Match : TP2 (HMM E-Value=0.21)
          Length = 215

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +2

Query: 458 LRGPLMPVQXPAPKSVAD---LSLKMKRTSKLINTLRGARSI 574
           ++  L+P + PAPK+  D    + K K+T+K +  ++G R +
Sbjct: 169 VKSGLLPARKPAPKNKRDTKKATSKRKKTTKSVKQIQGQRQM 210


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,784,975
Number of Sequences: 59808
Number of extensions: 265640
Number of successful extensions: 635
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)