Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0801
         (724 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) / br...    99   3e-21
At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) / br...    99   3e-21
At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D)            98   6e-21
At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S ...    83   1e-16
At2g02060.1 68415.m00141 calcium-dependent protein kinase-relate...    29   2.4  
At5g65110.1 68418.m08191 acyl-CoA oxidase (ACX2) identical to ac...    29   4.1  
At5g20560.1 68418.m02441 beta-1,3-glucanase, putative similar to...    28   7.2  

>At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) /
           breast basic conserved protein 1-related (BBC1)
          Length = 206

 Score = 98.7 bits (235), Expect = 3e-21
 Identities = 63/201 (31%), Positives = 93/201 (46%), Gaps = 2/201 (0%)
 Frame = +2

Query: 20  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 199
           K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+  R               LRP+V   T
Sbjct: 2   KHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQT 61

Query: 200 VRYHTKVRAGRGFTLREIRAQDXTQYXPERFGXL*IXXDAKXLLKSXXNPCFXXXXVXSA 379
           ++Y+ KVR G+GFTL E++A    +      G + +    K                   
Sbjct: 62  LKYNMKVRTGKGFTLEELKAAGIPKKLAPTIG-IAVDHRRKNRSLEGLQTNVQRLKTYKT 120

Query: 380 CFXVXPKGKXXLKGGXXXXXXXL-XTQLRGPLMPVQXPAP-KSVADLSLKMKRTSKLINT 553
              + P+    +K G          TQ++G  +P+    P   +  L+ +MK + K  + 
Sbjct: 121 KLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMK-SFKAFDK 179

Query: 554 LRGARSIAKLVGIRAKRLXDA 616
           +R  R+  +  G RAKR  +A
Sbjct: 180 IRLERTNKRHAGARAKRAAEA 200


>At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) /
           breast basic conserved protein 1-related (BBC1)
          Length = 206

 Score = 98.7 bits (235), Expect = 3e-21
 Identities = 63/201 (31%), Positives = 93/201 (46%), Gaps = 2/201 (0%)
 Frame = +2

Query: 20  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 199
           K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+  R               LRP+V   T
Sbjct: 2   KHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQT 61

Query: 200 VRYHTKVRAGRGFTLREIRAQDXTQYXPERFGXL*IXXDAKXLLKSXXNPCFXXXXVXSA 379
           ++Y+ KVR G+GFTL E++A    +      G + +    K                   
Sbjct: 62  LKYNMKVRTGKGFTLEELKAAGIPKKLAPTIG-IAVDHRRKNRSLEGLQTNVQRLKTYKT 120

Query: 380 CFXVXPKGKXXLKGGXXXXXXXL-XTQLRGPLMPVQXPAP-KSVADLSLKMKRTSKLINT 553
              + P+    +K G          TQ++G  +P+    P   +  L+ +MK + K  + 
Sbjct: 121 KLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMK-SFKAFDK 179

Query: 554 LRGARSIAKLVGIRAKRLXDA 616
           +R  R+  +  G RAKR  +A
Sbjct: 180 IRLERTNKRHAGARAKRAAEA 200


>At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D)
          Length = 206

 Score = 97.9 bits (233), Expect = 6e-21
 Identities = 64/201 (31%), Positives = 92/201 (45%), Gaps = 2/201 (0%)
 Frame = +2

Query: 20  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 199
           K NN+IP+ HF K WQ +VKTWFNQPAR+ RR+  R               LRP+V   T
Sbjct: 2   KHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQT 61

Query: 200 VRYHTKVRAGRGFTLREIRAQDXTQYXPERFGXL*IXXDAKXLLKSXXNPCFXXXXVXSA 379
           ++Y+ KVRAG+GFTL E++     +      G + +    K                  A
Sbjct: 62  LKYNMKVRAGKGFTLEELKVAGIPKKLAPTIG-ISVDHRRKNRSLEGLQSNVQRLKTYKA 120

Query: 380 CFXVXPKGKXXLKGGXXXXXXXL-XTQLRGPLMPV-QXPAPKSVADLSLKMKRTSKLINT 553
              V P+    +K G          TQ++G  MP+    A   +  L+  +K   K  + 
Sbjct: 121 KLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLK-AFKAYDK 179

Query: 554 LRGARSIAKLVGIRAKRLXDA 616
           +R  R+ A+  G RAKR  +A
Sbjct: 180 IRLERTNARHAGARAKRAAEA 200


>At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S
           ribosomal protein L13 (BBC1), Arabidopsis thaliana,
           gb:X75162
          Length = 206

 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 38/80 (47%), Positives = 50/80 (62%)
 Frame = +2

Query: 20  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 199
           K NN+IPNGHF K W+ +VKT FNQPA + RR+  R               +RP+V   T
Sbjct: 2   KHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQT 61

Query: 200 VRYHTKVRAGRGFTLREIRA 259
           + Y+ KVRAG+GFTL E++A
Sbjct: 62  LTYNMKVRAGKGFTLEELKA 81


>At2g02060.1 68415.m00141 calcium-dependent protein kinase-related /
           CDPK-related contains TIGRFAM TIGR01557: myb-like
           DNA-binding domain, SHAQKYF class; contains Pfam
           PF00249: Myb-like DNA-binding domain; similar to CDPK
           substrate protein 1; CSP1 (GI:6942190) [Mesembryanthemum
           crystallinum].
          Length = 626

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 150 ATALAFFILFCFLRYRRAGWLNQV 79
           A  L FFI FCF  YR +G+L  V
Sbjct: 266 AVLLLFFICFCFSLYRTSGYLRIV 289


>At5g65110.1 68418.m08191 acyl-CoA oxidase (ACX2) identical to
           acyl-CoA oxidase [Arabidopsis thaliana] GI:3044212
          Length = 692

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +2

Query: 596 AKRLXDAAENPDDVTKAPTR*RSEA 670
           AK L DA E PD VT+AP   +S+A
Sbjct: 658 AKELVDAFELPDHVTRAPIAMQSDA 682


>At5g20560.1 68418.m02441 beta-1,3-glucanase, putative similar to
           plant beta-1,3-glucanase genes bg4 GI:2808438 from
           [Arabidopsis thaliana]
          Length = 337

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = +2

Query: 446 LXTQLRGPLMPVQXPAPKSVADLSLKMKRTSKLINTLRGARSIAKLVGIRAKRLXDAAEN 625
           L   L  P   ++    ++VA + +  +    ++N LRG R I   VGI+ + L   A N
Sbjct: 41  LGDNLPSPSNVIKFYKSQNVAKIRI-FEPNKDVLNALRGNRDIGVTVGIKNEDLEALAAN 99

Query: 626 PDDV 637
            D V
Sbjct: 100 KDAV 103


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,918,149
Number of Sequences: 28952
Number of extensions: 193326
Number of successful extensions: 448
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)