Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0800
         (514 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    27   2.2  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   6.7  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    25   8.8  
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   8.8  

>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 379 YCNTSTRDEICVRFCKID 326
           YC T   +E+C+R  K+D
Sbjct: 193 YCLTDDGEEVCIRLAKVD 210


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -1

Query: 391  LTAYYCNTSTRDEICVRFC 335
            L AYYC      E+C R C
Sbjct: 1710 LEAYYCKLLVLAELCYRLC 1728


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = -3

Query: 134 SRHSRELGRRQTYLKTISKKIDSLVEILKDL 42
           +R  R  G+RQ Y+K++  +++ +   L+ +
Sbjct: 42  ARPKRRTGQRQMYIKSLVSRLEQMESTLRSV 72


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 461 SLNSICTVNILYKIMYQGSFN 399
           SLN+  + N+LYK+++   FN
Sbjct: 79  SLNTNSSFNVLYKVLFFPDFN 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,950,221
Number of Sequences: 5004
Number of extensions: 36571
Number of successful extensions: 61
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)