Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0799
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    26   4.7  
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    26   6.2  
SPAC23G3.09 |taf4||transcription factor TFIID complex subunit Ta...    25   8.2  
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc...    25   8.2  
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po...    25   8.2  

>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 574 FSKLAIQQHKPFFYQSNYRQIKQVC-KNVANFQFYFKY 464
           FSK+  + H+P  ++ NY  +  +C KN+ + Q Y  Y
Sbjct: 88  FSKIVAKLHEPCTHEVNYGGLCAICGKNITS-QDYMGY 124


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 94  ILCSLLHQPDFQEIWIRSG 38
           +LCS++H PD Q+I +  G
Sbjct: 69  MLCSIIHDPDCQDILLDIG 87


>SPAC23G3.09 |taf4||transcription factor TFIID complex subunit
           Taf4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -1

Query: 580 NRFSKLAIQQHKPF--FYQSNYRQIKQVCKNVANFQFYFKYHTE 455
           N   K+ ++ H      +  NY+Q+  V + +ANF  Y +Y +E
Sbjct: 165 NLLQKMIVESHHRTSQLHTDNYKQVDNVRQTLANFA-YKEYESE 207


>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 227 LPADITRQQRKAVFGAST*VLNC 159
           L  D+TR   + +FGA   +LNC
Sbjct: 453 LKGDVTRHGTRTIFGAFKDLLNC 475


>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 96  LFYVVCYINQIFRKSGFGVVFYTA 25
           ++ V  Y+ +IF+K GFG +  TA
Sbjct: 133 VYRVAYYMGKIFKKQGFGNLIATA 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,916,821
Number of Sequences: 5004
Number of extensions: 58621
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)