Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0799
(718 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0423 - 3092863-3094959 31 0.69
02_01_0413 - 3028946-3031111 31 0.69
02_01_0412 - 3005600-3007759 31 0.69
02_01_0411 - 2998806-3000938 31 1.2
02_03_0406 + 18663986-18664059,18665082-18665405,18665499-186655... 30 1.6
02_05_0973 + 33209385-33209456,33210517-33210721,33210810-332109... 29 3.7
02_01_0417 - 3048519-3048710,3048903-3050600,3050622-3050909,305... 29 4.9
02_01_0406 - 2958933-2962076 29 4.9
02_01_0404 - 2945611-2948802 29 4.9
07_01_0215 - 1607473-1609494 28 8.5
>02_01_0423 - 3092863-3094959
Length = 698
Score = 31.5 bits (68), Expect = 0.69
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = -3
Query: 170 VLNCSSFLFTRSPTFSLSTWEPIGNYFM*SVTSTRFSGNLDSEW 39
VLN SS LFT + F +TWE + N + + ++ RF+G + + +
Sbjct: 144 VLNISSNLFTGN--FPSTTWERMNNLVVLNASNNRFTGQMPTSF 185
>02_01_0413 - 3028946-3031111
Length = 721
Score = 31.5 bits (68), Expect = 0.69
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = -3
Query: 170 VLNCSSFLFTRSPTFSLSTWEPIGNYFM*SVTSTRFSGNLDSEW 39
VLN SS LFT + F +TWE + N + ++ FSG++ S +
Sbjct: 159 VLNISSNLFTGA--FPSTTWEKMSNLVAINASNNSFSGHIPSSF 200
>02_01_0412 - 3005600-3007759
Length = 719
Score = 31.5 bits (68), Expect = 0.69
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = -3
Query: 170 VLNCSSFLFTRSPTFSLSTWEPIGNYFM*SVTSTRFSGNLDS 45
VLN SS LFT + F +TWE + N F + ++ F+G + S
Sbjct: 158 VLNISSNLFTGA--FPSTTWEKMSNLFAINASNNSFTGYIPS 197
>02_01_0411 - 2998806-3000938
Length = 710
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = -3
Query: 170 VLNCSSFLFTRSPTFSLSTWEPIGNYFM*SVTSTRFSGNLDSEW 39
VLN SS FT + F STWE + N +V++ F+G++ S +
Sbjct: 148 VLNISSNQFTGA--FPSSTWEKMSNLVAINVSNNSFTGHIPSSF 189
>02_03_0406 +
18663986-18664059,18665082-18665405,18665499-18665559,
18666136-18666282,18666368-18666492,18666619-18666648,
18666689-18666893,18667532-18667741,18667886-18667888,
18670034-18670942,18671239-18672069
Length = 972
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = -3
Query: 170 VLNCSSFLFTRSPTFSLSTWEPIGNYFM*SVTSTRFSGNLDSEW 39
VLN SS LFT + F +TWE + N + ++ F+G++ S +
Sbjct: 513 VLNISSNLFTGA--FPSTTWEKMSNLVAINASNNSFTGHIPSSF 554
>02_05_0973 +
33209385-33209456,33210517-33210721,33210810-33210975,
33211268-33211490,33211928-33212004,33212090-33212183,
33212202-33212271,33212350-33212447,33212565-33212692,
33212772-33212900,33213013-33213421,33213984-33214105,
33214224-33214313,33215092-33215304,33215453-33215584,
33216258-33216333,33216403-33216420
Length = 773
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -1
Query: 595 NGKFKNRFSKL--AIQQHKPFFYQSNYRQIKQVCKNVANFQFYFKYHTETFL 446
N K +NR+ K+ + K FF+ +Y ++ + KN+++ Q + + TF+
Sbjct: 142 NSKDENRYKKILNTLDLRKDFFFSYSYHIMRSLQKNLSDPQEGWNIYESTFV 193
>02_01_0417 -
3048519-3048710,3048903-3050600,3050622-3050909,
3052308-3052377,3052417-3052668,3053235-3055297
Length = 1520
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -3
Query: 170 VLNCSSFLFTRSPTFSLSTWEPIGNYFM*SVTSTRFSGNLDS 45
VLN SS LFT + F +TWE + F + ++ F+G + S
Sbjct: 157 VLNISSNLFTGA--FPSTTWEKTSSLFAINASNNSFTGYIPS 196
>02_01_0406 - 2958933-2962076
Length = 1047
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -3
Query: 170 VLNCSSFLFTRSPTFSLSTWEPIGNYFM*SVTSTRFSGNLDSEW 39
VLN SS LFT F S W+ + N +V+S +F+G + + +
Sbjct: 156 VLNISSNLFTGQ--FPSSIWDVMKNLVALNVSSNKFTGKIPTRF 197
>02_01_0404 - 2945611-2948802
Length = 1063
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -3
Query: 170 VLNCSSFLFTRSPTFSLSTWEPIGNYFM*SVTSTRFSGNLDSEW 39
VLN SS FT F +TWE + N M + ++ F+G++ S +
Sbjct: 165 VLNISSNSFTGQ--FPSATWEMMKNLVMLNASNNSFTGHIPSNF 206
>07_01_0215 - 1607473-1609494
Length = 673
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +2
Query: 194 LSSADA*YRPAK*FKNCHYVFTNVFK*IHDAMRIWFVYVG 313
+ S DA Y A +++ +F N+ IH+AM++WF Y G
Sbjct: 161 MKSLDAHY--AGFYEDRSGIFRNLTLVIHEAMQVWFDYDG 198
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,817,686
Number of Sequences: 37544
Number of extensions: 314426
Number of successful extensions: 592
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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