Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0799
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trn...    29   4.4  
AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trn...    29   4.4  
Z81555-1|CAB04516.1|  242|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z80220-3|CAB02306.1|  601|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AC024882-5|AAF60932.1|  666|Caenorhabditis elegans Hypothetical ...    28   5.8  
AF068721-4|AAC19260.1|  298|Caenorhabditis elegans Hypothetical ...    28   7.7  

>AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform a protein.
          Length = 909

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
 Frame = -1

Query: 640 IYRN*IAGDLYFVSYNGKFKNRFSKLAIQQH--KPFFYQSNYRQIKQVCKNVANFQFYFK 467
           ++R+    D+ F+       ++  K A Q H  K +F +S    + +VC++V     +FK
Sbjct: 235 VFRDYFGYDVEFIMNITDVDDKIIKRARQSHLLKSYFNESQAPPVMKVCEDVVAALEHFK 294

Query: 466 YHTETFLT*DSYILYNIL 413
              ET +  D   ++ ++
Sbjct: 295 TKFETEMDPDKKKMFEVM 312


>AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform b protein.
          Length = 908

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
 Frame = -1

Query: 640 IYRN*IAGDLYFVSYNGKFKNRFSKLAIQQH--KPFFYQSNYRQIKQVCKNVANFQFYFK 467
           ++R+    D+ F+       ++  K A Q H  K +F +S    + +VC++V     +FK
Sbjct: 234 VFRDYFGYDVEFIMNITDVDDKIIKRARQSHLLKSYFNESQAPPVMKVCEDVVAALEHFK 293

Query: 466 YHTETFLT*DSYILYNIL 413
              ET +  D   ++ ++
Sbjct: 294 TKFETEMDPDKKKMFEVM 311


>Z81555-1|CAB04516.1|  242|Caenorhabditis elegans Hypothetical
           protein F58E10.5 protein.
          Length = 242

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -1

Query: 637 YRN*IAGDLYFVSYNGKFKNRFSKLAIQ-QHKPFFYQSNYRQIKQVCKNVANFQFYFKYH 461
           Y +  A D+   SYNG + N   +  +Q  +   +Y  NY+Q+      V NF F  ++ 
Sbjct: 50  YHHYPAQDMTTNSYNGGYDNSMQQNFMQPDNGAGYYNENYQQMPDFQFPVQNFDFTNQFE 109

Query: 460 TET 452
             T
Sbjct: 110 FTT 112


>Z80220-3|CAB02306.1|  601|Caenorhabditis elegans Hypothetical
           protein T08G11.3 protein.
          Length = 601

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 350 YQLPVLXXXYCTHQHIQTRFSLHHVF 273
           +Q P      C HQH ++RFS  H++
Sbjct: 17  FQEPSTRRALCFHQHCRSRFSFLHIY 42


>AC024882-5|AAF60932.1|  666|Caenorhabditis elegans Hypothetical
           protein Y9C9A.8 protein.
          Length = 666

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -2

Query: 366 YYYTIVPITSTILLVLYTPTYTNQILIASCIYLNTFV 256
           ++Y++ P+   +  + Y   Y N+ + + CI+ N FV
Sbjct: 211 FFYSMYPMVDPLPTIYYVDEYRNEFM-SECIFNNEFV 246


>AF068721-4|AAC19260.1|  298|Caenorhabditis elegans Hypothetical
           protein ZK1055.2 protein.
          Length = 298

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 496 FYKPVLFDGSWIGRRTAYVVGSLALKTYF*TYHYKIQNTNH 618
           FY   +  GS+I R T Y +    L   F  Y YK+ N+ H
Sbjct: 87  FYNWEIMAGSYIARNTQYAID---LLNEFADYEYKLPNSFH 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,815,350
Number of Sequences: 27780
Number of extensions: 322160
Number of successful extensions: 745
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)