Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0799
         (718 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g09190.1 68417.m01520 F-box family protein contains Pfam PF00...    28   5.4  
At3g43220.1 68416.m04562 phosphoinositide phosphatase family pro...    28   5.4  
At1g53860.1 68414.m06130 remorin family protein contains Pfam do...    28   5.4  
At5g15120.1 68418.m01771 expressed protein                             28   7.1  
At1g54115.1 68414.m06169 cation exchanger, putative                    28   7.1  
At1g36095.1 68414.m04487 hypothetical protein contains Pfam doma...    28   7.1  

>At4g09190.1 68417.m01520 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain; similar to Probable
           disease resistance RPP8-like protein 2
           (Swiss-Prot:Q9MAG6) [Arabidopsis thaliana]
          Length = 383

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 565 LAIQQH-KPFFYQSNYRQIKQVCKNVANFQF 476
           L  Q+H K FF+ S   Q K+ C NV NFQ+
Sbjct: 75  LIFQKHDKLFFFASPVHQ-KKTCPNVENFQY 104


>At3g43220.1 68416.m04562 phosphoinositide phosphatase family
           protein contains similarity to phosphoinositide
           phosphatase SAC1 [Rattus norvegicus]
           gi|11095248|gb|AAG29810; contains Pfam domain, PF02383:
           SacI homology domain; identical to SAC domain protein 3
           (SAC3) GI:31415722
          Length = 818

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -1

Query: 595 NGKFKNRFSKLA--IQQHKPFFYQSNYRQIKQVCKNVANFQFYFKYHTETFL 446
           N + +NR+ +L   +   K FF+  +Y  ++   KNV N++     + + F+
Sbjct: 142 NSRDENRYKRLLCMVDLTKDFFFSYSYNVMRSYQKNVCNYETGHNLYEKMFV 193


>At1g53860.1 68414.m06130 remorin family protein contains Pfam
           domain, PF03763: Remorin, C-terminal region
          Length = 442

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 64  NLVDVTDYIK*LPMGSHVDKLNVGDLVNRKLLQFNT 171
           NL + TD+IK LP+ S+    +  ++VN +   F++
Sbjct: 44  NLKETTDFIKSLPISSNQSSSSSNEMVNERRPSFSS 79


>At5g15120.1 68418.m01771 expressed protein
          Length = 293

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 164 LILTWMRQKLLSSADA*YRPAK*FKNCHYVFTN 262
           +++TW R+K+ S AD      + F  C  VF+N
Sbjct: 39  MMMTWRRKKIDSPADGITAVRRLFNTCKEVFSN 71


>At1g54115.1 68414.m06169 cation exchanger, putative
          Length = 644

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 646 TSIYRN*IAGDLYFVSYNGKFKNRFSKLAI 557
           + IYRN +  +L FV  +GKF   FS+  +
Sbjct: 35  SDIYRNPLLKNLSFVDSSGKFNRGFSQFTV 64


>At1g36095.1 68414.m04487 hypothetical protein contains Pfam domain,
           PF04937: Protein of unknown function (DUF 659)
          Length = 301

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 168 YLRGCAKNCFPLLTRNIGRQNDLKTAIT 251
           Y   CA +C  L+  +IG+ +++KT IT
Sbjct: 184 YWTPCAAHCIYLMLEDIGKISEVKTVIT 211


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,437,888
Number of Sequences: 28952
Number of extensions: 281836
Number of successful extensions: 553
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)