Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0797
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    65   1e-11
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    58   1e-09
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    29   0.79 
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    27   3.2  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      25   9.7  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 65.3 bits (152), Expect = 1e-11
 Identities = 31/56 (55%), Positives = 36/56 (64%)
 Frame = +2

Query: 542 QRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFP 709
           Q+ V KG H K  RK+R S  FRRPKT E  R PKY RKS+P  +R+D Y II  P
Sbjct: 10  QKTVQKGIHNKVARKVRTSTTFRRPKTLELARKPKYARKSVPHASRLDEYKIIVNP 65



 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 721 KAAMKKIEDNNTLVLLFTQVQTSTIFKAAVK 813
           ++AMKKIED+NTLV            K AVK
Sbjct: 69  ESAMKKIEDDNTLVFHVHLKANKFTIKNAVK 99


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 58.4 bits (135), Expect = 1e-09
 Identities = 28/56 (50%), Positives = 34/56 (60%)
 Frame = +2

Query: 542 QRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFP 709
           Q+ V KG H K  +K+R S  FRRPKT +  R PKY RKS+    R+D Y II  P
Sbjct: 10  QKTVQKGIHNKVAKKVRTSTTFRRPKTLQLSRKPKYARKSVAHAPRLDEYKIIVNP 65



 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/14 (78%), Positives = 14/14 (100%)
 Frame = +1

Query: 721 KAAMKKIEDNNTLV 762
           ++AMKKIED+NTLV
Sbjct: 69  ESAMKKIEDDNTLV 82


>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
 Frame = -3

Query: 760 PRCCYLQSSSLLPSDVRGKFNDVVGIHA----ISLRQRLPWVFRVPRRFKRLGSAEMHRV 593
           P  CY  SS+  PSD       V+G+ +      LR  +  VF V + F        H +
Sbjct: 569 PSICYFYSSTTKPSDKSMVIAAVIGLLSEHLWFLLRMFISSVFPVDKTFFAPAKERQHLL 628

Query: 592 ANFPYSLP 569
           A   +S+P
Sbjct: 629 AERSFSIP 636


>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -3

Query: 619 LGSAEMHRVANFPYSLPMFTFY--NLPLSLKCFSNRFHYFFCPLIPVFLGFGAIF 461
           LG      +A+   + P+ TF   N  +SL   +NR   FFC +I  F+G  A F
Sbjct: 385 LGDGLASLIASLMTTTPLTTFAQNNGVISLTKCANRRAGFFCAVILFFMGLFAKF 439


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = -3

Query: 742 QSSSLLPSDVRGKFNDVVGIHAISLRQRLPWVFRVPRRFKRLGSAEMHRVANFPYSLPMF 563
           QS+ +LP+      + ++    +S R   P  F    RF+ L S++   + + PY+ P  
Sbjct: 179 QSNVILPNFKALSADFMLRASPVSSRTPSPTRFPKHARFQTLNSSDSASIYSSPYTSPTL 238

Query: 562 TF 557
            F
Sbjct: 239 EF 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,933,137
Number of Sequences: 5004
Number of extensions: 33148
Number of successful extensions: 99
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)