Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0797
         (813 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0407 - 24983491-24983575,24983655-24984015,24984367-249844...    63   3e-10
01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855     62   5e-10
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420...    31   1.1  
03_06_0258 + 32706396-32706821                                         30   2.5  

>04_04_0407 -
           24983491-24983575,24983655-24984015,24984367-24984406,
           24984466-24984468
          Length = 162

 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 30/55 (54%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
 Frame = +2

Query: 548 KVVK-GEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFP 709
           K VK G   K  +KIR SV F RPKT +  R PKYPR S P RN++D Y I+K+P
Sbjct: 32  KAVKSGTAKKTTKKIRTSVTFHRPKTLKKSRDPKYPRVSTPGRNKLDQYQILKYP 86



 Score = 33.5 bits (73), Expect = 0.20
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = +1

Query: 721 KAAMKKIEDNNTLVLLFTQVQTSTIFKAAVK 813
           ++AMKKIEDNNTLV +          KAAVK
Sbjct: 90  ESAMKKIEDNNTLVFIVDLKADKKKIKAAVK 120


>01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855
          Length = 152

 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
 Frame = +2

Query: 548 KVVK-GEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFP 709
           K VK G   ++ +KIR SV F RPKT +  R PKYPR S P RN++D Y I+K+P
Sbjct: 22  KAVKSGSIKRKSKKIRTSVTFHRPKTLKKARDPKYPRVSAPGRNKLDQYQILKYP 76



 Score = 33.5 bits (73), Expect = 0.20
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = +1

Query: 721 KAAMKKIEDNNTLVLLFTQVQTSTIFKAAVK 813
           ++AMKKIEDNNTLV +          KAAVK
Sbjct: 80  ESAMKKIEDNNTLVFIVDLKADKKKIKAAVK 110


>07_01_0566 +
           4207894-4207974,4208090-4208144,4208671-4208759,
           4209742-4209794,4209966-4210120,4210201-4210528,
           4210618-4210730,4211394-4211538,4211951-4212259,
           4212340-4212420,4212989-4213349
          Length = 589

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +2

Query: 554 VKGEHGKRVRKIR-NSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYN 694
           +KGE  K++R+   NS   +R KT +PP H K  +K   K    D+Y+
Sbjct: 140 LKGEKEKKLRRTEDNSAAEKRVKTQKPPTHDKQKKKR--KHYSSDSYS 185


>03_06_0258 + 32706396-32706821
          Length = 141

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 507 FFVP*SQSFWASVQSSIWKLLAWVWQ 430
           FFVP S S W    SS   L +W+W+
Sbjct: 55  FFVPSSSSSWICPSSSTRLLASWIWR 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,937,712
Number of Sequences: 37544
Number of extensions: 218058
Number of successful extensions: 579
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)